SMTL ID : 6c6b.1 (2 other biounits)

Co-crystal structure of adenylyl-sulfate kinase from Cryptococcus neoformans bound to ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: L.41, S.42, A.43, S.44, G.45, K.46, S.47, T.48, I.49, R.151, T.187, V.190, D.191, V.192 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:A.43, A:S.44, A:G.45, A:K.46, A:S.47, A:T.48, A:T.48, A:R.151, A:D.191 Water bridges: A:K.46, A:K.46 Salt bridges: A:K.46 pi-Cation interactions: A:R.151 ADP.3: 14 residues within 4Å: Chain B: L.41, S.42, A.43, S.44, G.45, K.46, S.47, T.48, R.151, P.153, T.187, V.190, D.191, V.192 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:A.43, B:S.44, B:G.45, B:K.46, B:S.47, B:T.48, B:T.48, B:V.190 Water bridges: B:S.42, B:K.46, B:K.46 Salt bridges: B:K.46 pi-Cation interactions: B:R.151

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: E.128, P.135, F.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.134, A:F.136 EDO.4: 5 residues within 4Å: Chain B: R.124, E.128, P.135, F.136, E.182 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.124, B:E.128, B:E.128, B:F.136, B:Y.202 EDO.5: 4 residues within 4Å: Chain B: V.88, E.89, R.92, L.122 2 PLIP interactions: 2 interactions with chain B Water bridges: B:E.89, B:R.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Delker, S.L. et al., Crystal Structure of Adenylyl-sulfate kinase bound to ADP. To be Published

Release Date

2018-02-07

Peptides

Adenylyl-sulfate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Adenylyl-sulfate kinase

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