SMTL ID : 6c76.1

Structure of Iron containing alcohol dehydrogenase from Thermococcus thioreducens in an orthorhombic crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: D.193, H.197, H.260, H.272 Ligands: NAP.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.193, A:D.193, A:H.197, A:H.260, A:H.272

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 38 residues within 4Å: Chain A: S.33, G.34, S.35, M.36, R.38, H.39, A.64, E.65, P.66, G.91, G.92, S.93, V.94, D.96, K.99, S.139, T.140, G.142, A.143, S.145, S.148, A.150, S.151, V.152, K.159, L.178, P.179, T.181, M.182, P.183, V.186, S.190, D.193, H.197, F.251, H.260, H.272 Ligands: FE.1 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:F.251 Hydrogen bonds: A:S.33, A:S.35, A:S.35, A:E.65, A:G.92, A:S.93, A:S.93, A:S.93, A:D.96, A:S.139, A:T.140, A:S.148, A:K.159, A:T.181 Water bridges: A:G.34, A:R.38, A:R.38, A:G.61, A:E.65, A:G.91, A:D.96, A:T.140, A:V.152, A:V.152 Salt bridges: A:R.38

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 7 residues within 4Å: Chain B: G.91, G.92, S.93, T.140, G.142, A.143, S.190 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:A.143 Hydrogen bonds: B:G.92, B:T.140 Water bridges: B:S.93, B:G.142

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 8 residues within 4Å: Chain A: W.3, L.4, K.5, R.7 Chain B: W.3, L.4, K.5, R.7 1 PLIP interactions: 1 interactions with chain B Water bridges: B:L.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Larson, S.B. et al., The structure of an iron-containing alcohol dehydrogenase from a hyperthermophilic archaeon in two chemical states. Acta Crystallogr F Struct Biol Commun (2019)

Release Date

2019-01-23

Peptides

Alcohol dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alcohol dehydrogenase

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