SMTL ID : 6c80.1 (1 other biounit)

Crystal structure of a flax cytokinin oxidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.1: 31 residues within 4Å: Chain A: F.19, A.56, R.57, G.58, N.59, G.60, H.61, S.62, Q.66, A.67, T.124, D.125, Y.126, L.129, T.130, G.132, G.133, T.134, S.136, N.137, G.139, V.140, G.186, G.189, V.190, I.191, W.335, W.341, Y.439, Q.477 Ligands: GOL.5 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:F.19, A:F.19, A:H.61, A:Y.126, A:Y.126, A:L.129, A:W.335, A:W.341, A:W.341 Hydrogen bonds: A:A.56, A:G.58, A:N.59, A:G.60, A:H.61, A:H.61, A:S.62, A:S.62, A:Q.66, A:D.125, A:Y.126, A:T.130, A:S.136, A:N.137, A:G.139, A:V.140, A:V.140, A:I.191, A:I.191, A:Q.477 Water bridges: A:S.62, A:I.63, A:T.130, A:G.133

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: V.316, E.317, M.320, R.321 No protein-ligand interaction detected (PLIP)

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: S.286, S.287, S.288 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.287, A:S.288, A:S.288 GOL.4: 8 residues within 4Å: Chain A: D.18, F.19, N.59, G.60, H.61, Y.126, R.330, W.335 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.126, A:Y.126, A:R.330 Water bridges: A:R.57, A:N.59 GOL.5: 9 residues within 4Å: Chain A: D.125, V.140, E.238, N.343, L.372, Y.374, I.399, Y.439 Ligands: FAD.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.125, A:E.238, A:N.343, A:Y.374 GOL.6: 7 residues within 4Å: Chain A: S.151, S.152, N.153, V.154, F.178, L.182, D.382 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.154, A:V.154, A:D.382, A:R.384 Water bridges: A:S.151

1 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)

PG6.7: 12 residues within 4Å: Chain A: R.209, F.240, S.254, P.256, V.322, R.324, V.325, W.335, W.341, P.370, L.372, L.403 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.209, A:R.209, A:R.324

1 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.8: 6 residues within 4Å: Chain A: R.206, D.291, V.294, K.295, K.308, E.310 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.308, A:K.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wan, L. et al., Structural and functional insights into the modulation of the activity of a flax cytokinin oxidase by flax rust effector AvrL567-A. Mol. Plant Pathol. (2019)

Release Date

2018-06-20

Peptides

cytokinin oxidase LuCKX1.1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cytokinin oxidase LuCKX1.1

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