- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x KAA: 5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE(Non-covalent)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 5 residues within 4Å:- Chain A: W.421, H.422, R.423, E.424, P.426
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:W.421
EDO.6: 5 residues within 4Å:- Chain A: R.203, I.266
- Chain B: R.203, E.213
- Ligands: EDO.7
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.203, A:R.203, A:I.266, B:R.203, B:E.213
EDO.7: 7 residues within 4Å:- Chain A: R.203, E.213, E.215
- Chain B: I.199, R.203, I.266
- Ligands: EDO.6
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:R.203, B:R.203, B:R.203, B:I.266
- Water bridges: A:E.213, A:E.213
EDO.8: 3 residues within 4Å:- Chain B: S.362, Q.363, E.364
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.363, B:E.364
EDO.13: 5 residues within 4Å:- Chain C: W.421, H.422, R.423, E.424, P.426
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:W.421
EDO.17: 5 residues within 4Å:- Chain C: R.203, I.266
- Chain D: R.203, E.213
- Ligands: EDO.18
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain C- Hydrogen bonds: D:R.203, D:E.213, C:R.203, C:R.203, C:I.266
EDO.18: 7 residues within 4Å:- Chain C: R.203, E.213, E.215
- Chain D: I.199, R.203, I.266
- Ligands: EDO.17
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:R.203, D:R.203, D:R.203, D:I.266
- Water bridges: C:E.213, C:E.213
EDO.19: 3 residues within 4Å:- Chain D: S.362, Q.363, E.364
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.363, D:E.364
- 2 x NA: SODIUM ION(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 5 residues within 4Å:- Chain A: R.229
- Chain B: N.236
- Chain C: R.229
- Chain D: N.236
- Ligands: SO4.15
4 PLIP interactions:1 interactions with chain B, 1 interactions with chain D, 1 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: B:N.236, D:N.236
- Salt bridges: C:R.229, A:R.229
SO4.9: 5 residues within 4Å:- Chain B: H.422, R.423, E.424, K.425, P.426
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.424
- Water bridges: B:H.422, B:E.427, B:E.427
SO4.10: 4 residues within 4Å:- Chain A: K.35, F.41
- Chain B: W.421, Q.453
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:Q.453
- Salt bridges: A:K.35
SO4.15: 5 residues within 4Å:- Chain A: R.229
- Chain B: N.236
- Chain C: R.229
- Chain D: N.236
- Ligands: SO4.4
4 PLIP interactions:1 interactions with chain B, 1 interactions with chain D, 1 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: B:N.236, D:N.236
- Salt bridges: C:R.229, A:R.229
SO4.20: 5 residues within 4Å:- Chain D: H.422, R.423, E.424, K.425, P.426
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:E.424
- Water bridges: D:H.422, D:E.427, D:E.427
SO4.21: 4 residues within 4Å:- Chain C: K.35, F.41
- Chain D: W.421, Q.453
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:Q.453
- Salt bridges: C:K.35
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dranow, D.M. et al., Crystal Structure of Lysyl-tRNA Synthetase from Cryptosporidium parvum complexed with L-Lysylsulfamoyl Adenosine. to be published
- Release Date
- 2018-02-28
- Peptides
- Lysine--tRNA ligase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x KAA: 5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE(Non-covalent)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dranow, D.M. et al., Crystal Structure of Lysyl-tRNA Synthetase from Cryptosporidium parvum complexed with L-Lysylsulfamoyl Adenosine. to be published
- Release Date
- 2018-02-28
- Peptides
- Lysine--tRNA ligase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B