SMTL ID : 6c9q.1

Mycobacterium tuberculosis adenosine kinase bound to 5'-aminoadenosine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x 5N5: 5'-amino-5'-deoxyadenosine(Non-covalent)

5N5.1: 19 residues within 4Å: Chain A: S.15, A.17, D.19, G.54, G.55, V.56, N.59, F.109, F.123, M.128, A.153, Q.179, Q.180, T.260, G.261, D.264, T.300 Chain B: S.43, L.45 12 PLIP interactions: 9 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:D.19, A:D.19, A:G.55, A:N.59, A:Q.180, A:D.264, B:S.43, B:S.43 Water bridges: A:G.261, A:G.261, B:L.45 pi-Stacking: A:F.123 5N5.2: 19 residues within 4Å: Chain A: S.43, L.45 Chain B: S.15, A.17, D.19, G.54, G.55, V.56, N.59, F.109, F.123, M.128, A.153, Q.179, Q.180, T.260, G.261, D.264, T.300 12 PLIP interactions: 9 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.19, B:D.19, B:G.55, B:N.59, B:Q.180, B:D.264, A:S.43, A:S.43 Water bridges: B:G.261, B:G.261, A:L.45 pi-Stacking: B:F.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crespo, R.A. et al., Structure-Guided Drug Design of 6-Substituted Adenosine Analogues as Potent Inhibitors of Mycobacterium tuberculosis Adenosine Kinase. J.Med.Chem. (2019)

Release Date

2019-05-01

Peptides

Adenosine kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Adenosine kinase