SMTL ID : 6ca9.1 (1 other biounit)

Crystal structure of Fab PCT64_LMCA (SAR), the least mutated common ancestor of the HIV-1 broadly neutralizing antibody lineage PCT64

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 11 residues within 4Å: Chain A: Q.160, S.162, S.176, S.177, T.178 Chain B: F.187, P.188, V.190, S.198, L.199, S.200 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:F.187, B:S.198, A:S.162, A:S.176, A:T.178, A:T.178

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 6 residues within 4Å: Chain A: F.84, A.85, K.103, V.104, D.105, Q.166 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rantalainen, K. et al., Co-evolution of HIV Envelope and Apex-Targeting Neutralizing Antibody Lineage Provides Benchmarks for Vaccine Design. Cell Rep (2018)

Release Date

2018-06-27

Peptides

PCT64_LMCA Fab light chain: A
PCT64_LMCA Fab heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PCT64_LMCA Fab light chain

PCT64_LMCA Fab heavy chain

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