SMTL ID : 6cbj.1

Crystal Structure of DH270.3 Fab in complex with Man9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN-MAN-MAN-MAN.1: 20 residues within 4Å: Chain A: Y.27, T.28, D.31, Y.32, G.99, W.101, S.103, Y.105, V.106, Y.108, Y.111, N.113, D.115 Chain B: L.48, Y.51, E.52, K.55, W.56, A.57, S.58 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.28, A:T.28, A:D.31 Hydrophobic interactions: A:Y.105

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain A: V.93, Q.119 Chain B: G.43 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fera, D. et al., HIV envelope V3 region mimic embodies key features of a broadly neutralizing antibody lineage epitope. Nat Commun (2018)

Release Date

2018-02-21

Peptides

DH270.3 Fab heavy chain: A
DH270.3 Fab light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

DH270.3 Fab heavy chain

DH270.3 Fab light chain

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