SMTL ID : 6cby.1 (1 other biounit)

Crystal structure of human SET and MYND Domain Containing protein 2 with MTF9975

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.53, C.56, C.75, C.79 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.53, A:C.56, A:C.75, A:C.79 ZN.2: 4 residues within 4Å: Chain A: C.66, C.69, H.87, C.91 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.66, A:C.69, A:H.87, A:C.91 ZN.3: 4 residues within 4Å: Chain A: C.210, C.263, C.265, C.268 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.210, A:C.263, A:C.265, A:C.268

1 x EW4: [3-(4-amino-6-methyl-1H-imidazo[4,5-c]pyridin-1-yl)-3-methylazetidin-1-yl][1-({1-[(1R)-cyclohept-2-en-1-yl]piperidin-4-yl}methyl)-1H-pyrrol-3-yl]methanone(Non-covalent)

EW4.4: 16 residues within 4Å: Chain A: G.17, K.18, H.138, C.182, N.183, G.184, F.185, T.186, A.204, N.207, H.208, Y.241, Y.259, F.261, T.262, E.264 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:K.18, A:F.185, A:Y.241 Hydrogen bonds: A:H.208, A:E.264 pi-Stacking: A:Y.259, A:F.261, A:F.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taylor, A.P. et al., Selective, Small-Molecule Co-Factor Binding Site Inhibition of a Su(var)3-9, Enhancer of Zeste, Trithorax Domain Containing Lysine Methyltransferase. J.Med.Chem. (2019)

Release Date

2018-03-14

Peptides

N-lysine methyltransferase SMYD2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-lysine methyltransferase SMYD2

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