- Coordinates
- PDB Format
- Method
- SOLUTION NMR
- Oligo State
- hetero-2-1-mer
- Ligands
- 64 x PCW: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)(Non-functional Binders)
- 16 x 17F: O-[(S)-({(2R)-2,3-bis[(9Z)-octadec-9-enoyloxy]propyl}oxy)(hydroxy)phosphoryl]-L-serine(Non-functional Binders)(Non-covalent)
17F.7: 7 residues within 4Å:- Ligands: PCW.6, PCW.12, PCW.15, PCW.16, PCW.31, 17F.38, PCW.73
No protein-ligand interaction detected (PLIP)17F.37: 16 residues within 4Å:- Chain B: K.178, K.179
- Ligands: PCW.17, PCW.19, PCW.21, PCW.22, PCW.28, PCW.35, 17F.40, 17F.43, 17F.47, PCW.53, PCW.57, PCW.71, PCW.72, 17F.78
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.179
- Salt bridges: B:K.178
17F.38: 11 residues within 4Å:- Chain B: K.184, K.186
- Ligands: PCW.6, 17F.7, PCW.9, PCW.12, PCW.16, 17F.41, PCW.63, PCW.69, PCW.73
3 PLIP interactions:3 interactions with chain B- Salt bridges: B:K.186, B:K.186, B:K.186
17F.39: 12 residues within 4Å:- Chain B: K.181
- Ligands: PCW.1, PCW.5, PCW.12, PCW.14, PCW.18, PCW.20, PCW.24, 17F.43, PCW.59, PCW.61, PCW.74
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:K.181
17F.40: 12 residues within 4Å:- Chain B: K.179
- Ligands: PCW.18, PCW.20, PCW.21, PCW.22, PCW.25, PCW.27, PCW.32, PCW.35, 17F.37, PCW.65, 17F.77
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:K.179
17F.41: 10 residues within 4Å:- Chain B: K.186
- Ligands: PCW.6, PCW.9, PCW.12, PCW.14, PCW.24, 17F.38, PCW.61, PCW.63, PCW.69
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.186
- Salt bridges: B:K.186
17F.42: 7 residues within 4Å:- Chain B: K.106
- Ligands: PCW.2, PCW.15, PCW.19, PCW.23, PCW.29, PCW.68
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:K.106
17F.43: 15 residues within 4Å:- Chain B: K.180, S.183, K.184
- Ligands: PCW.12, PCW.14, PCW.17, PCW.20, PCW.24, PCW.31, PCW.35, 17F.37, 17F.39, PCW.44, PCW.73, PCW.74
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.180
- Salt bridges: B:K.180
17F.47: 8 residues within 4Å:- Ligands: PCW.19, PCW.22, 17F.37, PCW.44, PCW.52, PCW.53, PCW.72, 17F.78
No protein-ligand interaction detected (PLIP)17F.77: 8 residues within 4Å:- Ligands: PCW.25, PCW.32, 17F.40, PCW.51, PCW.54, PCW.55, PCW.65, 17F.79
No protein-ligand interaction detected (PLIP)17F.78: 5 residues within 4Å:- Ligands: 17F.37, 17F.47, PCW.53, PCW.72, 17F.82
No protein-ligand interaction detected (PLIP)17F.79: 5 residues within 4Å:- Chain C: V.78
- Ligands: PCW.55, PCW.65, 17F.77, 17F.83
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:V.78
17F.80: 4 residues within 4Å:- Chain C: L.199
- Ligands: PCW.8, PCW.9, PCW.10
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:L.199
17F.81: 9 residues within 4Å:- Ligands: PCW.4, PCW.15, PCW.28, PCW.30, PCW.34, PCW.58, PCW.68, PCW.71, PCW.76
No protein-ligand interaction detected (PLIP)17F.82: 7 residues within 4Å:- Ligands: PCW.25, PCW.26, PCW.53, PCW.57, PCW.65, PCW.71, 17F.78
No protein-ligand interaction detected (PLIP)17F.83: 5 residues within 4Å:- Ligands: PCW.25, PCW.57, PCW.65, PCW.70, 17F.79
No protein-ligand interaction detected (PLIP)- 1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
GNP.48: 21 residues within 4Å:- Chain B: V.14, G.15, V.16, G.17, K.18, S.19, A.20, F.30, V.31, D.32, E.33, Y.34, D.35, P.36, N.118, K.119, D.121, L.122, S.147, A.148, K.149
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:G.15, B:G.17, B:K.18, B:S.19, B:S.19, B:S.19, B:V.31, B:D.32, B:K.119, B:S.147, B:S.147, B:A.148, B:K.149
- Salt bridges: B:D.121
- pi-Stacking: B:F.30
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x EWS: (2R,4S)-4-[(5-bromo-1H-indole-3-carbonyl)amino]-2-[(4-chlorophenyl)methyl]piperidin-1-ium(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fang, Z. et al., Inhibition of K-RAS4B by a Unique Mechanism of Action: Stabilizing Membrane-Dependent Occlusion of the Effector-Binding Site. Cell Chem Biol (2018)
- Release Date
- 2018-09-05
- Peptides
- Apolipoprotein A-I: AC
GTPase KRas: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
B
- Coordinates
- PDB Format
- Method
- SOLUTION NMR
- Oligo State
- hetero-2-1-mer
- Ligands
- 64 x PCW: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)(Non-functional Binders)
- 16 x 17F: O-[(S)-({(2R)-2,3-bis[(9Z)-octadec-9-enoyloxy]propyl}oxy)(hydroxy)phosphoryl]-L-serine(Non-functional Binders)(Non-covalent)
- 1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 1 x MG: MAGNESIUM ION(Non-covalent)
- 1 x EWS: (2R,4S)-4-[(5-bromo-1H-indole-3-carbonyl)amino]-2-[(4-chlorophenyl)methyl]piperidin-1-ium(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fang, Z. et al., Inhibition of K-RAS4B by a Unique Mechanism of Action: Stabilizing Membrane-Dependent Occlusion of the Effector-Binding Site. Cell Chem Biol (2018)
- Release Date
- 2018-09-05
- Peptides
- Apolipoprotein A-I: AC
GTPase KRas: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
B