SMTL ID : 6cci.1

The Crystal Structure of XOAT1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: D.141, F.143, T.144, R.189, E.411, N.425, K.428, Y.432 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.428 Hydrogen bonds: A:D.141, A:R.189, A:R.189

2 x CO: COBALT (II) ION(Non-covalent)

CO.2: 1 residues within 4Å: Chain A: E.146 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.146, H2O.1, H2O.14 CO.3: 2 residues within 4Å: Chain A: R.358 Ligands: NAG.6 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: F.149, N.151, E.152 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.151, A:E.152 Water bridges: A:N.151 NAG.5: 2 residues within 4Å: Chain A: N.241, T.243 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.241, A:T.243 NAG.6: 6 residues within 4Å: Chain A: N.207, K.208, R.209, N.255, D.300 Ligands: CO.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.255, A:D.300 Water bridges: A:R.250, A:N.255, A:R.358 NAG.7: 3 residues within 4Å: Chain A: N.393, S.395, M.396 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.393, A:N.393, A:N.393 NAG.8: 3 residues within 4Å: Chain A: S.408, E.411, N.412 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.9: 1 residues within 4Å: Chain A: E.134 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.134, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lunin, V.V. et al., Molecular Mechanism of Polysaccharide Acetylation by the Arabidopsis XylanO-acetyltransferase XOAT1. Plant Cell (2020)

Release Date

2019-02-20

Peptides

Protein ESKIMO 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein ESKIMO 1