SMTL ID : 6ccr.1

Selenomethionyl derivative of a GID4 fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

36 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 4 residues within 4Å: Chain A: E.28, V.30, Y.44, K.46 Ligand excluded by PLIP UNX.2: 6 residues within 4Å: Chain A: R.15, G.16, D.26, V.27, E.28 Ligands: UNX.3 Ligand excluded by PLIP UNX.3: 4 residues within 4Å: Chain A: G.16, H.17, D.26 Ligands: UNX.2 Ligand excluded by PLIP UNX.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.5: 2 residues within 4Å: Chain A: K.21 Ligands: UNX.6 Ligand excluded by PLIP UNX.6: 2 residues within 4Å: Chain A: K.21 Ligands: UNX.5 Ligand excluded by PLIP UNX.7: 1 residues within 4Å: Chain A: D.134 Ligand excluded by PLIP UNX.8: 6 residues within 4Å: Chain A: T.5, S.6, E.184, F.185, R.186 Ligands: UNX.26 Ligand excluded by PLIP UNX.9: 3 residues within 4Å: Chain A: T.5, R.186 Ligands: UNX.25 Ligand excluded by PLIP UNX.10: 3 residues within 4Å: Chain A: N.23, S.24, Y.25 Ligand excluded by PLIP UNX.11: 2 residues within 4Å: Chain A: I.132, K.133 Ligand excluded by PLIP UNX.12: 1 residues within 4Å: Chain A: R.85 Ligand excluded by PLIP UNX.13: 5 residues within 4Å: Chain A: R.85, A.98, K.99, F.101, N.102 Ligand excluded by PLIP UNX.14: 4 residues within 4Å: Chain A: D.115, Q.149, K.150, S.151 Ligand excluded by PLIP UNX.15: 3 residues within 4Å: Chain A: W.77, D.78, A.141 Ligand excluded by PLIP UNX.16: 6 residues within 4Å: Chain A: H.87, Y.159, Y.160, W.166, Y.167 Ligands: UNX.33 Ligand excluded by PLIP UNX.17: 5 residues within 4Å: Chain A: H.17, K.19, S.169, L.170, N.171 Ligand excluded by PLIP UNX.18: 1 residues within 4Å: Chain A: F.140 Ligand excluded by PLIP UNX.19: 3 residues within 4Å: Chain A: T.56, D.129, I.132 Ligand excluded by PLIP UNX.20: 1 residues within 4Å: Chain A: H.178 Ligand excluded by PLIP UNX.21: 4 residues within 4Å: Chain A: E.184, F.185, R.186 Ligands: UNX.26 Ligand excluded by PLIP UNX.22: 2 residues within 4Å: Chain A: E.81, N.102 Ligand excluded by PLIP UNX.23: 3 residues within 4Å: Chain A: G.11, V.30, A.180 Ligand excluded by PLIP UNX.24: 4 residues within 4Å: Chain A: E.64, H.70, K.76, R.120 Ligand excluded by PLIP UNX.25: 4 residues within 4Å: Chain A: T.5, S.6, R.186 Ligands: UNX.9 Ligand excluded by PLIP UNX.26: 5 residues within 4Å: Chain A: S.6, E.184, R.186 Ligands: UNX.8, UNX.21 Ligand excluded by PLIP UNX.27: 1 residues within 4Å: Chain A: P.176 Ligand excluded by PLIP UNX.28: 4 residues within 4Å: Chain A: V.34, D.35, T.36 Ligands: UNX.35 Ligand excluded by PLIP UNX.29: 1 residues within 4Å: Chain A: Y.158 Ligand excluded by PLIP UNX.30: 4 residues within 4Å: Chain A: K.90, F.91, L.92, E.156 Ligand excluded by PLIP UNX.31: 4 residues within 4Å: Chain A: V.127, P.128, D.129, D.134 Ligand excluded by PLIP UNX.32: 3 residues within 4Å: Chain A: S.164, E.165, W.166 Ligand excluded by PLIP UNX.33: 7 residues within 4Å: Chain A: Y.159, Y.160, H.161, S.164, E.165, W.166 Ligands: UNX.16 Ligand excluded by PLIP UNX.34: 3 residues within 4Å: Chain A: S.136, G.137, A.138 Ligand excluded by PLIP UNX.35: 4 residues within 4Å: Chain A: D.35, T.36, G.37 Ligands: UNX.28 Ligand excluded by PLIP UNX.36: 2 residues within 4Å: Chain A: G.1, G.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., Molecular basis of GID4-mediated recognition of degrons for the Pro/N-end rule pathway. Nat. Chem. Biol. (2018)

Release Date

2018-04-04

Peptides

Glucose-induced degradation protein 4 homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucose-induced degradation protein 4 homolog

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