SMTL ID : 6ccu.1

Complex between a GID4 fragment and a short peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x PRO- HIS- ARG- VAL: Short peptide(Non-covalent)

PRO-HIS-ARG-VAL.1: 15 residues within 4Å: Chain A: Q.18, Y.25, L.45, I.47, L.50, E.123, S.136, G.137, A.138, S.139, F.140, Y.144, Y.159, H.161, S.164 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.47, A:L.50, A:Y.159 Hydrogen bonds: A:Q.18, A:E.123, A:G.137, A:S.139, A:S.139 Water bridges: A:Q.168

5 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 2 residues within 4Å: Chain A: H.33, V.34 No protein-ligand interaction detected (PLIP) UNX.3: 3 residues within 4Å: Chain A: T.56, H.130 Ligands: UNX.4 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: Y.54, H.130 Ligands: UNX.3 No protein-ligand interaction detected (PLIP) UNX.5: 4 residues within 4Å: Chain A: E.64, H.70, K.76, R.120 No protein-ligand interaction detected (PLIP) UNX.6: 2 residues within 4Å: Chain A: F.140, A.141 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., Molecular basis of GID4-mediated recognition of degrons for the Pro/N-end rule pathway. Nat. Chem. Biol. (2018)

Release Date

2018-03-07

Peptides

Glucose-induced degradation protein 4 homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucose-induced degradation protein 4 homolog

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