SMTL ID : 6cd4.1

Crystal Structure of the first bromodomain of human BRD4 in complex with the inhibitor JWG046

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

monomer

Ligands

1 x EX1: 2-({2-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidine-1-carbonyl]phenyl}amino)-5-methyl-11-(propan-2-yl)-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one(Non-covalent)

EX1.1: 12 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, V.46, L.51, L.53, Y.56, C.95, Y.98, N.99, I.105 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.41, A:L.51, A:L.53, A:L.53, A:Y.98, A:Y.98, A:I.105, A:I.105 Hydrogen bonds: A:N.99 Water bridges: A:Q.44, A:Q.44 pi-Stacking: A:W.40

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 9 residues within 4Å: Chain A: T.9, S.10, N.11, P.12, K.14, K.16, N.75, N.76, Y.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.11 EDO.3: 7 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, T.90, N.94, I.97 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62 Water bridges: A:T.62, A:T.62 EDO.4: 3 residues within 4Å: Chain A: K.71, E.74, N.75 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.74, A:N.75 Water bridges: A:N.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., Structural and Atropisomeric Factors Governing the Selectivity of Pyrimido-benzodiazipinones as Inhibitors of Kinases and Bromodomains. ACS Chem. Biol. (2018)

Release Date

2018-08-29

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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