- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.92 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.2: 4 residues within 4Å:- Chain A: G.102, R.103, G.104, S.474
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.102, A:D.407
NA.11: 5 residues within 4Å:- Chain B: G.102, R.103, G.104, D.407, S.474
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.102
- Water bridges: B:E.108
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.4: 5 residues within 4Å:- Chain A: R.88, H.92, D.121
- Ligands: HEM.1, OXY.8
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.88
OXY.8: 5 residues within 4Å:- Chain A: W.91, H.92, I.217
- Ligands: HEM.1, OXY.4
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:W.91
- Water bridges: A:I.217, A:Y.218, A:Y.218, A:Y.218
OXY.13: 5 residues within 4Å:- Chain B: R.88, H.92, D.121
- Ligands: HEM.10, OXY.16
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.88
- Water bridges: B:D.121
OXY.16: 5 residues within 4Å:- Chain B: W.91, H.92, D.121
- Ligands: HEM.10, OXY.13
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:W.91, B:D.121
- Water bridges: B:I.217, B:Y.218, B:Y.218, B:V.219
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.5: 4 residues within 4Å:- Chain A: K.359, K.360, H.361, R.362
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.362
- Salt bridges: A:K.359, A:H.361, A:R.362
PO4.14: 3 residues within 4Å:- Chain B: K.360, H.361, R.362
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.360, B:R.362
- Salt bridges: B:H.361, B:R.362
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.6: 3 residues within 4Å:- Chain A: P.120, T.303, S.304
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:P.120
MPD.7: 4 residues within 4Å:- Chain A: D.63, P.134, I.135, K.138
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:K.138
MPD.15: 7 residues within 4Å:- Chain B: A.123, L.189, A.270, V.273, W.289, T.303, S.304
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:A.270, B:V.273
- Hydrogen bonds: B:W.289
- 2 x NIZ: pyridine-4-carbohydrazide(Non-covalent)(Covalent)
NIZ.9: 11 residues within 4Å:- Chain A: R.103, E.108, E.178, D.179, V.180, G.473, S.474, Q.602, L.603, T.605
- Ligands: CL.3
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.103, A:R.103, A:E.178, A:Q.602
- Water bridges: A:G.104, A:G.104
NIZ.17: 11 residues within 4Å:- Chain B: R.103, E.108, E.178, D.179, V.180, G.473, S.474, Q.602, L.603, T.605
- Ligands: CL.12
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.103, B:R.103, B:E.178, B:Q.602
- Water bridges: B:G.104, B:K.476
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Loewen, P.C., Crystal structure of the W202F variant of catalase-peroxidase from B. pseudomallei with INH bound. To be published
- Release Date
- 2018-02-21
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.92 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 2 x NIZ: pyridine-4-carbohydrazide(Non-covalent)(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Loewen, P.C., Crystal structure of the W202F variant of catalase-peroxidase from B. pseudomallei with INH bound. To be published
- Release Date
- 2018-02-21
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B