SMTL ID : 6ceh.1

Design, Synthesis, X-ray and Biological Activities of Selenides Bearing the Benzenesulfonamide Moiety as New Class of Agents for Prevention of Diabetic Cerebrovascular Pathology

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.93, H.95, E.105, H.118, T.197 Ligands: EZ1.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.93, A:H.95, A:H.118

2 x EZ1: 4-[(prop-2-en-1-yl)selanyl]benzene-1-sulfonamide(Non-covalent)

EZ1.2: 12 residues within 4Å: Chain A: H.93, H.95, H.118, V.120, V.141, L.196, T.197, T.198, P.200, W.207 Ligands: ZN.1, GOL.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.120, A:L.196, A:L.196, A:P.200 Hydrogen bonds: A:T.197, A:T.197 EZ1.3: 8 residues within 4Å: Chain A: H.3, W.4, H.9, N.10, H.14, W.15, D.18, F.19 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:H.3, A:N.10 Hydrogen bonds: A:D.18, A:D.18, A:D.18 Water bridges: A:W.4

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: N.61, H.63, A.64, N.66, Q.91, H.93, T.198 Ligands: EZ1.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.61, A:N.66, A:N.66, A:Q.91 Water bridges: A:T.198

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: K.152, I.214, S.215 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.215 Water bridges: A:K.152, A:E.185 Salt bridges: A:K.152 SO4.6: 4 residues within 4Å: Chain A: K.166, T.167, E.232, G.233 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.233 Water bridges: A:K.166, A:T.167, A:E.234, A:E.234 Salt bridges: A:K.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Angeli, A. et al., Design, Synthesis, and X-ray of Selenides as New Class of Agents for Prevention of Diabetic Cerebrovascular Pathology. ACS Med Chem Lett (2018)

Release Date

2018-05-23

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carbonic anhydrase 2

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