- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.4: 5 residues within 4Å:- Chain A: R.88, X.91, H.92, N.121
- Ligands: HEM.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.88, A:N.121, A:N.121
OXY.12: 5 residues within 4Å:- Chain B: R.88, X.91, H.92, N.121
- Ligands: HEM.9
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.88, B:N.121, B:N.121
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.5: 2 residues within 4Å:- Chain A: H.361, R.362
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.362
- Salt bridges: A:H.361, A:R.362
PO4.13: 3 residues within 4Å:- Chain B: K.360, H.361, R.362
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:K.360, B:R.362
- Water bridges: B:R.362
- Salt bridges: B:H.361, B:R.362
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.6: 3 residues within 4Å:- Chain A: W.342, L.370, F.374
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:W.342, A:L.370, A:F.374, A:F.374
- Water bridges: A:W.330
MPD.7: 4 residues within 4Å:- Chain A: L.189, W.289, T.303, S.304
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.189
- Hydrogen bonds: A:W.289, A:T.303
MPD.8: 4 residues within 4Å:- Chain A: D.63, P.134, I.135, K.138
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:K.138
- Water bridges: A:K.138
MPD.14: 5 residues within 4Å:- Chain B: A.123, L.189, W.289, T.303, S.304
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:W.289
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Loewen, P.C., Crystal structure of the D141N variant of catalase-peroxidase from B. pseudomallei. To be published
- Release Date
- 2018-02-21
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x OXY: OXYGEN MOLECULE(Non-covalent)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Loewen, P.C., Crystal structure of the D141N variant of catalase-peroxidase from B. pseudomallei. To be published
- Release Date
- 2018-02-21
- Peptides
- Catalase-peroxidase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B