SMTL ID : 6cen.1

Crystal Structure of WHSC1L1 in Complex with Inhibitor PEP21

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

1 x ACE- GLY- VAL- NLE- ARG- ILE- NH2: ACE-GLY-VAL-NLE-ARG-ILE-NH2(Non-covalent)

ACE-GLY-VAL-NLE-ARG-ILE-NH2.1: 18 residues within 4Å: Chain A: Y.117, C.127, I.131, H.135, F.142, M.144, L.145, T.146, V.147, T.175, K.177, F.202, Y.204, N.205, L.206, D.207, C.208, L.209 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.131, A:I.131, A:L.145, A:F.202, A:Y.204, A:Y.204, A:L.209 Hydrogen bonds: A:M.144, A:T.146, A:T.175, A:T.175, A:Y.204, A:N.205, A:D.207, A:D.207 Water bridges: A:T.146, A:T.175, A:T.175 Salt bridges: A:D.207

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.2: 18 residues within 4Å: Chain A: R.98, G.99, W.100, T.140, N.141, F.142, Y.143, R.163, F.164, M.165, N.166, H.167, Y.204, E.215, C.216, H.217, C.218, L.227 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:W.100, A:W.100, A:T.140, A:F.142, A:F.142, A:Y.143, A:N.166, A:N.166, A:H.167, A:H.167, A:H.217 Water bridges: A:R.98, A:T.140, A:N.141, A:N.141

3 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: C.41, C.43, C.51, C.57 Ligands: ZN.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.41, A:C.43, A:C.51, A:C.57 ZN.4: 5 residues within 4Å: Chain A: C.51, C.66, C.71, C.77 Ligands: ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.51, A:C.66, A:C.71, A:C.77 ZN.5: 4 residues within 4Å: Chain A: C.169, C.216, C.218, C.223 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.169, A:C.216, A:C.218, A:C.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morrison, M.J. et al., Identification of a peptide inhibitor for the histone methyltransferase WHSC1. PLoS ONE (2018)

Release Date

2018-05-09

Peptides

Histone-lysine N-methyltransferase NSD3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase NSD3