SMTL ID : 6cg6.1

mouse cadherin-10 EC1-2 adhesive fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 8 residues within 4Å: Chain A: E.11, R.65, E.66, D.98, I.99, D.101, N.102, D.134 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.11, A:D.98, A:I.99, A:D.101, A:D.134 CA.2: 7 residues within 4Å: Chain A: E.11, E.12, D.64, R.65, E.66, D.101, N.102 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.11, A:E.12, A:D.64, A:E.66, A:D.101 CA.3: 10 residues within 4Å: Chain A: N.100, N.102, E.103, P.104, D.132, D.134, S.141, A.142, D.187, L.195 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.102, A:D.132, A:D.134, A:S.141, A:D.187 CA.6: 8 residues within 4Å: Chain B: E.11, R.65, E.66, D.98, I.99, D.101, N.102, D.134 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:D.98, B:I.99, B:D.101, B:D.134 CA.7: 7 residues within 4Å: Chain B: E.11, E.12, D.64, R.65, E.66, D.101, N.102 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:E.12, B:D.64, B:E.66, B:D.101 CA.8: 10 residues within 4Å: Chain B: N.100, N.102, E.103, P.104, D.132, D.134, S.141, A.142, D.187, L.195 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.102, B:D.132, B:D.134, B:S.141, B:D.187

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 11 residues within 4Å: Chain A: F.8, L.9, L.10, Q.19, Y.20, V.21 Chain B: F.8, L.9, L.10, H.97 Ligands: EDO.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.8 EDO.9: 11 residues within 4Å: Chain A: F.8, L.9, L.10, H.97 Chain B: F.8, L.9, L.10, Q.19, Y.20, V.21 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.8

2 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)

TAM.5: 4 residues within 4Å: Chain A: E.12, R.62, D.64, E.67 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.62, A:D.64 TAM.10: 4 residues within 4Å: Chain B: E.12, R.62, D.64, E.67 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.62, B:D.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brasch, J. et al., Homophilic and Heterophilic Interactions of Type II Cadherins Identify Specificity Groups Underlying Cell-Adhesive Behavior. Cell Rep (2018)

Release Date

2018-05-09

Peptides

Cadherin-10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cadherin-10