SMTL ID : 6cgb.1

chimera of mouse cadherin-11 EC1 and mouse cadherin-6 EC2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 8 residues within 4Å: Chain A: E.11, R.65, E.66, D.98, I.99, D.101, N.102, D.134 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.11, A:E.66, A:D.98, A:D.101, A:D.134 CA.2: 6 residues within 4Å: Chain A: E.11, E.12, D.64, E.66, D.101 Ligands: GOL.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.11, A:D.64, A:D.101 CA.3: 9 residues within 4Å: Chain A: N.100, N.102, P.104, D.132, D.134, S.141, A.142, D.187, L.195 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.102, A:D.132, A:D.132, A:D.134, A:D.187 CA.7: 8 residues within 4Å: Chain B: E.11, R.65, E.66, D.98, I.99, D.101, N.102, D.134 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:E.66, B:D.98, B:D.101, B:D.134 CA.8: 6 residues within 4Å: Chain B: E.11, E.12, D.64, E.66, D.101 Ligands: GOL.11 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.11, B:D.64, B:D.101 CA.9: 9 residues within 4Å: Chain B: N.100, N.102, P.104, D.132, D.134, S.141, A.142, D.187, L.195 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.102, B:D.132, B:D.132, B:D.134, B:D.187

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ACT.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: E.12, D.101 Ligands: CA.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.12, A:D.101 GOL.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.11: 3 residues within 4Å: Chain B: E.12, D.101 Ligands: CA.8 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.12, B:D.101 GOL.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brasch, J. et al., Homophilic and Heterophilic Interactions of Type II Cadherins Identify Specificity Groups Underlying Cell-Adhesive Behavior. Cell Rep (2018)

Release Date

2018-05-09

Peptides

Cadherin-11, Cadherin-6 chimera: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cadherin-11, Cadherin-6 chimera