SMTL ID : 6cgs.1

mouse cadherin-7 EC1-2 adhesive fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 8 residues within 4Å: Chain A: E.11, E.12, D.64, R.65, E.66, D.101, N.102 Ligands: CA.2 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.11, A:E.12, A:D.64, A:E.66, A:D.101, H2O.10 CA.2: 9 residues within 4Å: Chain A: E.11, R.65, E.66, D.98, I.99, D.101, N.102, D.134 Ligands: CA.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.11, A:D.98, A:I.99, A:D.101, A:D.134 CA.3: 9 residues within 4Å: Chain A: N.100, N.102, P.104, D.132, D.134, S.141, A.142, D.187, L.195 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.102, A:D.132, A:D.134, A:S.141, A:D.187 CA.4: 8 residues within 4Å: Chain B: E.11, R.65, E.66, D.98, I.99, D.101, N.102, D.134 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:E.66, B:E.66, B:D.98, B:D.134 CA.5: 7 residues within 4Å: Chain B: E.11, E.12, D.64, R.65, E.66, D.101, N.102 6 PLIP interactions: 5 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.11, B:E.12, B:D.64, B:E.66, B:D.101, H2O.21 CA.6: 9 residues within 4Å: Chain B: N.100, N.102, P.104, D.132, D.134, S.141, A.142, D.187, L.195 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.102, B:D.132, B:D.134, B:S.141, B:D.187

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain B: F.106, G.109, P.110, T.198, T.199, S.200 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:F.106, B:S.200, B:S.200 Water bridges: B:F.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brasch, J. et al., Homophilic and Heterophilic Interactions of Type II Cadherins Identify Specificity Groups Underlying Cell-Adhesive Behavior. Cell Rep (2018)

Release Date

2018-05-09

Peptides

Cadherin-7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cadherin-7