SMTL ID : 6ch0.2 (1 other biounit)

Structure of the Quorum Quenching lactonase from Alicyclobacillus acidoterrestris bound to a glycerol molecule

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

4 x CO: COBALT (II) ION(Non-covalent)

CO.1: 6 residues within 4Å: Chain A: D.121, H.122, D.219, H.265 Ligands: CO.2, GOL.5 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.121, A:H.122, A:D.219, A:D.219, A:H.265 CO.2: 6 residues within 4Å: Chain A: H.117, H.119, H.197, D.219 Ligands: CO.1, GOL.5 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.117, A:H.119, A:H.197, A:D.219 CO.6: 6 residues within 4Å: Chain B: D.121, H.122, D.219, H.265 Ligands: CO.7, GOL.10 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.121, B:H.122, B:D.219, B:D.219, B:H.265 CO.7: 6 residues within 4Å: Chain B: H.117, H.119, H.197, D.219 Ligands: CO.6, GOL.10 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.117, B:H.119, B:H.197, B:D.219

4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 5 residues within 4Å: Chain A: N.181, V.183, K.189, H.205, T.257 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.189 Water bridges: A:H.205 PG4.4: 5 residues within 4Å: Chain A: R.177, D.178, N.192, F.193, R.245 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.178 Water bridges: A:N.192 PG4.8: 5 residues within 4Å: Chain B: N.181, V.183, K.189, H.205, T.257 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.189 Water bridges: B:H.205 PG4.9: 5 residues within 4Å: Chain B: R.177, D.178, N.192, F.193, R.245 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.192

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 11 residues within 4Å: Chain A: F.86, H.117, H.119, D.121, H.122, H.197, D.219, Y.222, H.265 Ligands: CO.1, CO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.222 GOL.10: 11 residues within 4Å: Chain B: F.86, H.117, H.119, D.121, H.122, H.197, D.219, Y.222, H.265 Ligands: CO.6, CO.7 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bergonzi, C. et al., Structural and Biochemical Characterization of AaL, a Quorum Quenching Lactonase with Unusual Kinetic Properties. Sci Rep (2018)

Release Date

2018-08-15

Peptides

Beta-lactamase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
F

Beta-lactamase

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