- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.30 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
TPP.4: 23 residues within 4Å:- Chain A: P.27, I.28, E.62, Q.86, L.90, E.814, T.835, G.836, C.837, F.866, E.867, G.966, D.967, G.968, W.969, I.973, T.995, V.997, Y.998, S.999, N.1000, T.1001
- Ligands: MG.5
23 PLIP interactions:23 interactions with chain A- Hydrophobic interactions: A:I.28, A:Q.86, A:L.90, A:F.866, A:F.866, A:I.973, A:Y.998, A:Y.998, A:T.1001
- Hydrogen bonds: A:C.837, A:G.966, A:D.967, A:D.967, A:G.968, A:W.969, A:T.995, A:V.997, A:S.999, A:N.1000
- Water bridges: A:R.112, A:E.814, A:T.995
- pi-Stacking: A:F.866
TPP.10: 25 residues within 4Å:- Chain B: P.27, I.28, E.62, Q.86, L.90, R.112, E.814, T.835, G.836, C.837, F.866, E.867, G.966, D.967, G.968, W.969, I.973, T.995, V.997, Y.998, S.999, N.1000, T.1001
- Ligands: MG.11, COA.12
24 PLIP interactions:24 interactions with chain B- Hydrophobic interactions: B:I.28, B:Q.86, B:L.90, B:F.866, B:F.866, B:I.973, B:Y.998, B:T.1001
- Hydrogen bonds: B:R.112, B:E.814, B:C.837, B:G.966, B:D.967, B:D.967, B:G.968, B:W.969, B:T.995, B:S.999, B:N.1000
- Water bridges: B:E.814, B:S.838, B:S.838, B:T.995
- pi-Stacking: B:F.866
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.5: 5 residues within 4Å:- Chain A: D.967, T.995, V.997, S.999
- Ligands: TPP.4
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.967, A:T.995, A:V.997, H2O.1
MG.11: 5 residues within 4Å:- Chain B: D.967, T.995, V.997, S.999
- Ligands: TPP.10
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.967, B:T.995, B:V.997, H2O.1
- 2 x COA: COENZYME A(Non-covalent)
COA.6: 16 residues within 4Å:- Chain A: T.29, I.121, G.423, S.424, D.425, G.426, T.427, V.428, G.429, K.456, T.461, R.554, N.556, Y.587, N.598, N.1000
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:S.424, A:D.425, A:D.425, A:D.425, A:G.426, A:T.427, A:V.428, A:G.429, A:S.454, A:K.456, A:N.556, A:N.556, A:N.598
- pi-Stacking: A:Y.587
COA.12: 25 residues within 4Å:- Chain B: T.29, R.112, I.121, L.422, G.423, S.424, D.425, G.426, T.427, V.428, G.429, Y.452, D.453, S.454, K.455, K.456, R.554, N.556, V.557, Y.587, N.598, N.1000, T.1001, R.1016
- Ligands: TPP.10
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:Y.452
- Hydrogen bonds: B:S.424, B:D.425, B:G.426, B:T.427, B:V.428, B:G.429, B:S.454, B:N.556, B:N.556, B:N.598, B:N.1000
- Salt bridges: B:R.1016
- pi-Stacking: B:Y.587
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, P.Y. et al., Binding site for coenzyme A revealed in the structure of pyruvate:ferredoxin oxidoreductase fromMoorella thermoacetica. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2018-03-28
- Peptides
- PYRUVATE-FERREDOXIN OXIDOREDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.30 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x TPP: THIAMINE DIPHOSPHATE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x COA: COENZYME A(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, P.Y. et al., Binding site for coenzyme A revealed in the structure of pyruvate:ferredoxin oxidoreductase fromMoorella thermoacetica. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2018-03-28
- Peptides
- PYRUVATE-FERREDOXIN OXIDOREDUCTASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
C