SMTL ID : 6cit.1

Crystal Structure of MVM NS2 NES Peptide in complex with CRM1-Ran-RanBP1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 27 residues within 4Å: Chain A: D.39, G.40, G.41, T.42, G.43, K.44, T.45, T.46, F.56, E.57, K.58, K.59, Y.60, V.61, A.62, T.63, A.88, G.89, Q.90, N.143, K.144, D.146, I.147, S.171, A.172, K.173 Ligands: MG.2 28 PLIP interactions: 28 interactions with chain A Hydrogen bonds: A:G.41, A:T.42, A:T.42, A:G.43, A:K.44, A:K.44, A:T.45, A:T.46, A:T.46, A:E.57, A:Y.60, A:Y.60, A:T.63, A:T.63, A:G.89, A:Q.90, A:N.143, A:K.144, A:K.144, A:S.171, A:A.172, A:K.173 Water bridges: A:T.45, A:V.61, A:T.63 Salt bridges: A:D.146 pi-Stacking: A:F.56, A:F.56

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.45, T.63 Ligands: GNP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.45, A:T.63, H2O.2, H2O.2

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: R.97, N.121, N.124, W.125, R.127, D.128 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.121, A:N.124, A:N.124, A:R.127 Water bridges: A:W.125, A:R.127 GOL.5: 5 residues within 4Å: Chain C: L.808, N.812, D.853, A.854, W.857 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.812 GOL.6: 6 residues within 4Å: Chain C: S.24, T.25, Q.28, G.29, S.30, Q.33 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.30, C:Q.33 GOL.7: 4 residues within 4Å: Chain C: I.592, R.593, D.633, Q.636 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.636 Water bridges: C:D.633, C:D.633 GOL.8: 6 residues within 4Å: Chain C: F.170, L.183, K.186, N.187, S.190, W.226 1 PLIP interactions: 1 interactions with chain C Water bridges: C:W.226 GOL.9: 8 residues within 4Å: Chain C: I.356, E.357, E.358, R.359, F.362, N.400, V.402, L.430 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:I.356, C:E.358, C:R.359, C:N.400, C:N.400 Water bridges: C:R.359

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain C: K.533, K.571, C.572, K.573, Y.574, H.575 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fu, S.C. et al., Correlation of CRM1-NES affinity with nuclear export activity. Mol. Biol. Cell (2018)

Release Date

2018-06-27

Peptides

GTP-binding nuclear protein Ran: A
Ran-specific GTPase-activating protein 1: B
Exportin-1: C
NS2: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

GTP-binding nuclear protein Ran

Ran-specific GTPase-activating protein 1

Exportin-1

NS2

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