- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.46 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PCG: CYCLIC GUANOSINE MONOPHOSPHATE(Non-covalent)
- 24 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-functional Binders)(Non-covalent)
PGW.2: 2 residues within 4Å:- Ligands: PGW.3, PGW.7
No protein-ligand interaction detected (PLIP)PGW.3: 6 residues within 4Å:- Chain A: L.51, L.58, H.168, A.185, Y.189
- Ligands: PGW.2
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.58, A:A.185, A:Y.189
PGW.4: 2 residues within 4Å:- Chain A: Y.44, I.47
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Y.44, A:Y.44, A:I.47
PGW.5: 8 residues within 4Å:- Chain A: L.53, S.121, L.128, L.131, F.162, G.169, S.176, L.177
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.53, A:L.131, A:F.162, A:L.177
- Hydrogen bonds: A:S.176
PGW.6: 9 residues within 4Å:- Chain A: L.156, V.160, T.201, L.240, L.244
- Chain B: L.224, A.227, A.228, L.232
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:T.201, A:L.240, A:L.244, B:L.224, B:A.227
PGW.7: 5 residues within 4Å:- Chain A: G.186, Y.189, F.193
- Chain B: V.217
- Ligands: PGW.2
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Y.189, B:V.217
PGW.9: 2 residues within 4Å:- Ligands: PGW.10, PGW.14
No protein-ligand interaction detected (PLIP)PGW.10: 6 residues within 4Å:- Chain B: L.51, L.58, H.168, A.185, Y.189
- Ligands: PGW.9
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.58, B:A.185, B:Y.189
PGW.11: 2 residues within 4Å:- Chain B: Y.44, I.47
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:Y.44, B:Y.44, B:I.47
PGW.12: 8 residues within 4Å:- Chain B: L.53, S.121, L.128, L.131, F.162, G.169, S.176, L.177
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.53, B:L.131, B:F.162, B:L.177
- Hydrogen bonds: B:S.176
PGW.13: 9 residues within 4Å:- Chain B: L.156, V.160, T.201, L.240, L.244
- Chain C: L.224, A.227, A.228, L.232
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: B:T.201, B:L.240, B:L.244, C:L.224, C:A.227
PGW.14: 5 residues within 4Å:- Chain B: G.186, Y.189, F.193
- Chain C: V.217
- Ligands: PGW.9
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:Y.189, C:V.217
PGW.16: 2 residues within 4Å:- Ligands: PGW.17, PGW.21
No protein-ligand interaction detected (PLIP)PGW.17: 6 residues within 4Å:- Chain C: L.51, L.58, H.168, A.185, Y.189
- Ligands: PGW.16
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:L.58, C:A.185, C:Y.189
PGW.18: 2 residues within 4Å:- Chain C: Y.44, I.47
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:Y.44, C:Y.44, C:I.47
PGW.19: 8 residues within 4Å:- Chain C: L.53, S.121, L.128, L.131, F.162, G.169, S.176, L.177
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:L.53, C:L.131, C:F.162, C:L.177
- Hydrogen bonds: C:S.176
PGW.20: 9 residues within 4Å:- Chain C: L.156, V.160, T.201, L.240, L.244
- Chain D: L.224, A.227, A.228, L.232
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:L.224, D:A.227, C:T.201, C:L.240, C:L.244
PGW.21: 5 residues within 4Å:- Chain C: G.186, Y.189, F.193
- Chain D: V.217
- Ligands: PGW.16
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:V.217, C:Y.189
PGW.22: 5 residues within 4Å:- Chain A: V.217
- Chain D: G.186, Y.189, F.193
- Ligands: PGW.24
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain A- Hydrophobic interactions: D:Y.189, A:V.217
PGW.24: 2 residues within 4Å:- Ligands: PGW.22, PGW.25
No protein-ligand interaction detected (PLIP)PGW.25: 6 residues within 4Å:- Chain D: L.51, L.58, H.168, A.185, Y.189
- Ligands: PGW.24
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:L.58, D:A.185, D:Y.189
PGW.26: 2 residues within 4Å:- Chain D: Y.44, I.47
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:Y.44, D:Y.44, D:I.47
PGW.27: 8 residues within 4Å:- Chain D: L.53, S.121, L.128, L.131, F.162, G.169, S.176, L.177
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:L.53, D:L.131, D:F.162, D:L.177
- Hydrogen bonds: D:S.176
PGW.28: 9 residues within 4Å:- Chain A: L.224, A.227, A.228, L.232
- Chain D: L.156, V.160, T.201, L.240, L.244
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: D:T.201, D:L.240, D:L.244, A:L.224, A:A.227
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rheinberger, J. et al., Ligand discrimination and gating in cyclic nucleotide-gated ion channels from apo and partial agonist-bound cryo-EM structures. Elife (2018)
- Release Date
- 2018-08-01
- Peptides
- SthK cyclic nucleotide-gated potassium channel: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.46 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x PCG: CYCLIC GUANOSINE MONOPHOSPHATE(Non-covalent)
- 24 x PGW: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate(Non-functional Binders)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Rheinberger, J. et al., Ligand discrimination and gating in cyclic nucleotide-gated ion channels from apo and partial agonist-bound cryo-EM structures. Elife (2018)
- Release Date
- 2018-08-01
- Peptides
- SthK cyclic nucleotide-gated potassium channel: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.