SMTL ID : 6cmx.1

Human Teneurin 2 extra-cellular region

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN.1: 5 residues within 4Å: Chain A: N.1117, S.1119, G.1128, Q.1130, R.1137 No protein-ligand interaction detected (PLIP)

1 x MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose(Non-covalent)

MAN-MAN.2: 6 residues within 4Å: Chain A: I.1611, N.1627, D.1629 Ligands: NAG.12, MAN.13, MAN.14 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.1627

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.3: 6 residues within 4Å: Chain A: Y.838, N.841, I.854, D.855, N.856 Ligands: NAG.4 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.854 NAG.4: 3 residues within 4Å: Chain A: Y.838 Ligands: NAG.3, MAN.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.838, A:Y.838 NAG.6: 5 residues within 4Å: Chain A: T.936, N.937, S.947, L.948, K.1802 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.937 NAG.7: 7 residues within 4Å: Chain A: V.978, E.979, C.996, N.997, N.998, T.1000, H.1014 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.998 NAG.8: 5 residues within 4Å: Chain A: H.1014, R.1030, N.1032, L.1041, S.1043 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.1032, A:N.1032, A:S.1043 NAG.9: 3 residues within 4Å: Chain A: N.1218, L.1237, G.1840 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.1237 NAG.10: 1 residues within 4Å: Chain A: N.1422 No protein-ligand interaction detected (PLIP) NAG.11: 5 residues within 4Å: Chain A: N.1562, S.1564, N.1565, Q.1631 Ligands: NAG.12 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.1562, A:S.1564, A:S.1564, A:Q.1631, A:Q.1631 NAG.12: 4 residues within 4Å: Chain A: D.1629 Ligands: MAN-MAN.2, NAG.11, MAN.13 No protein-ligand interaction detected (PLIP)

3 x MAN: alpha-D-mannopyranose(Non-functional Binders)(Non-covalent)

MAN.5: 1 residues within 4Å: Ligands: NAG.4 No protein-ligand interaction detected (PLIP) MAN.13: 2 residues within 4Å: Ligands: MAN-MAN.2, NAG.12 No protein-ligand interaction detected (PLIP) MAN.14: 4 residues within 4Å: Chain A: M.1610, I.1611, S.1626 Ligands: MAN-MAN.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.1610, A:S.1626, A:S.1626

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Structural Basis for Teneurin Function in Circuit-Wiring: A Toxin Motif at the Synapse. Cell (2018)

Release Date

2018-07-25

Peptides

Teneurin-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Teneurin-2