SMTL ID : 6cnh.1

Human PRPF4B in complex with Rebastinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 919: 4-[4-({[3-tert-butyl-1-(quinolin-6-yl)-1H-pyrazol-5-yl]carbamoyl}amino)-3-fluorophenoxy]-N-methylpyridine-2-carboxamide(Non-covalent)

919.1: 24 residues within 4Å: Chain A: S.1, T.39, Q.41, V.47, R.49, E.59, A.61, K.63, T.74, K.77, E.78, L.82, L.85, L.97, F.113, E.114, P.115, L.116, L.152, H.159, L.168, C.179, D.180, F.181 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:V.47, A:K.77, A:E.78, A:E.78, A:L.82, A:L.97, A:F.113, A:L.152, A:L.168, A:D.180, A:F.181 Hydrogen bonds: A:S.1, A:Q.41, A:E.78, A:E.78, A:E.78, A:L.116, A:D.180 Water bridges: A:K.63

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: G.42, V.43, F.44, S.45, K.63, F.181 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.43, A:F.44, A:S.45, A:S.45 Water bridges: A:K.63, A:K.63 Salt bridges: A:K.63 SO4.3: 3 residues within 4Å: Chain A: S.339, N.341, Q.342 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.339, A:N.341, A:Q.342 SO4.4: 3 residues within 4Å: Chain A: R.32, R.55, R.101 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.32 Salt bridges: A:R.32, A:R.55 SO4.5: 4 residues within 4Å: Chain A: N.34, R.51, N.53, N.57 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.34, A:N.53, A:N.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Godoi, P.H.C. et al., Crystal structure of the human PRPF4B in complex with Rebastinib. To be Published

Release Date

2018-03-28

Peptides

Serine/threonine-protein kinase PRP4 homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase PRP4 homolog

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