SMTL ID : 6cnw.1

STRUCTURE OF HUMANIZED SINGLE DOMAIN ANTIBODY SD84

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.92 Å

Oligo State

monomer

Ligands

3 x ACT: ACETATE ION

ACT.1: 3 residues within 4Å: Chain A: F.27, T.28, K.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.28, A:T.28 Water bridges: A:K.97, A:E.103 Salt bridges: A:K.97 ACT.2: 3 residues within 4Å: Chain A: T.57, Y.59, T.68 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.57, A:Y.59 ACT.3: 3 residues within 4Å: Chain A: D.72, N.73, S.74 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.73 Hydrogen bonds: A:S.74 Water bridges: A:N.73, A:N.73

4 x PEG: DI(HYDROXYETHYL)ETHER

PEG.4: 5 residues within 4Å: Chain A: N.52, G.56, T.57, Y.58 Ligands: PEG.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.52, A:T.57, A:Y.58 Water bridges: A:G.55 PEG.5: 5 residues within 4Å: Chain A: L.11, V.12, Q.13, S.115, S.116 No protein-ligand interaction detected (PLIP) PEG.6: 5 residues within 4Å: Chain A: W.33, Y.35, W.47, V.50, Y.58 No protein-ligand interaction detected (PLIP) PEG.7: 2 residues within 4Å: Chain A: Y.58 Ligands: PEG.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laursen, N.S. et al., Universal protection against influenza infection by a multidomain antibody to influenza hemagglutinin. Science (2018)

Release Date

2018-11-14

Peptides

humanized antibody SD84h: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

humanized antibody SD84h

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