SMTL ID : 6coi.1

AtHNL enantioselectivity mutant At-A9-H7 Apo, Y13C,Y121L,P126F,L128W,C131T,A209I with CYANIDE, benzaldehyde, MANDELIC ACID NITRILE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: E.53, T.54, T.139, N.141, G.142, T.143, M.144, D.183, K.186 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.183, A:K.186, A:K.186

1 x CYN: CYANIDE ION(Non-covalent)

CYN.2: 6 residues within 4Å: Chain A: N.12, A.13, S.81, F.82, F.179 Ligands: HBX.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.13, A:F.82

3 x HBX: benzaldehyde(Non-covalent)

HBX.3: 13 residues within 4Å: Chain A: N.12, A.13, C.14, S.81, W.129, L.147, M.149, F.153, L.158, F.179, H.236 Ligands: CYN.2, HBX.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.129, A:L.147, A:F.153 Hydrogen bonds: A:N.12, A:S.81 pi-Stacking: A:F.179 HBX.4: 9 residues within 4Å: Chain A: F.107, L.119, L.122, M.123, F.126, W.129, F.179, I.210 Ligands: HBX.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.107, A:L.119, A:L.122, A:M.123, A:W.129 pi-Stacking: A:F.179 HBX.5: 10 residues within 4Å: Chain B: F.107, L.119, L.122, M.123, F.126, W.129, F.179, I.210 Ligands: MXN.6, MNN.7 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.107, B:L.119, B:L.122, B:F.126, B:W.129, B:F.179, B:F.179, B:I.210 Hydrogen bonds: B:M.123

1 x MXN: (2R)-hydroxy(phenyl)ethanenitrile(Non-covalent)

MXN.6: 14 residues within 4Å: Chain B: N.12, A.13, C.14, S.81, F.82, W.129, L.147, M.149, F.153, L.158, F.179, H.236 Ligands: HBX.5, MNN.7 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.129, B:L.147, B:F.153 Hydrogen bonds: B:N.12, B:A.13, B:S.81, B:F.82 pi-Stacking: B:F.179

1 x MNN: (S)-MANDELIC ACID NITRILE(Non-covalent)

MNN.7: 11 residues within 4Å: Chain B: N.12, A.13, S.81, F.82, M.149, F.153, L.158, F.179, H.236 Ligands: HBX.5, MXN.6 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.153, B:L.158 Hydrogen bonds: B:N.12, B:A.13, B:S.81, B:F.82 pi-Stacking: B:F.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jones, B.J. et al., AtHNL enantioselectivity mutants. To be published

Release Date

2019-03-20

Peptides

Alpha-hydroxynitrile lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha-hydroxynitrile lyase

Related Entries With Identical Sequence