SMTL ID : 6cpt.1

crystal structure of yeast caPDE2 in complex with IBMX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.278, H.349, D.350, D.462 Ligands: MG.2 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.278, A:H.349, A:D.350, A:D.462, H2O.1, H2O.3

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.350 Ligands: ZN.1 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.350, H2O.1, H2O.2, H2O.3, H2O.5, H2O.7

1 x IBM: 3-ISOBUTYL-1-METHYLXANTHINE(Non-covalent)

IBM.3: 7 residues within 4Å: Chain A: I.463, N.465, L.480, F.484, G.528, Q.529, F.532 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.484 Hydrogen bonds: A:N.465, A:Q.529 pi-Stacking: A:F.532, A:F.532

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, T. et al., Crystal Structures of Candida albicans Phosphodiesterase 2 and Implications for Its Biological Functions. Biochemistry (2018)

Release Date

2019-02-20

Peptides

Phosphodiesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphodiesterase

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