SMTL ID : 6cpw.1

Discovery of 3(S)-thiomethyl pyrrolidine ERK inhibitors for oncology

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: Y.193, R.197, R.200, H.238, Y.239 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.197, A:R.200, A:Y.239, A:Y.239 Salt bridges: A:R.197, A:R.200 SO4.2: 3 residues within 4Å: Chain A: G.188, F.189, K.265 3 PLIP interactions: 3 interactions with chain A Water bridges: A:G.188, A:G.188 Salt bridges: A:K.265

1 x F8V: (3S)-N-[3-(4-fluorophenyl)-1H-indazol-5-yl]-3-(methylsulfanyl)-1-(2-oxo-2-{4-[4-(pyrimidin-2-yl)phenyl]piperazin-1-yl}ethyl)pyrrolidine-3-carboxamide(Non-covalent)

F8V.3: 30 residues within 4Å: Chain A: I.37, A.41, Y.42, V.45, A.58, K.60, I.62, S.63, P.64, Y.70, R.73, T.74, E.77, I.90, I.109, Q.111, D.112, L.113, M.114, E.115, T.116, D.117, K.120, S.159, N.160, L.162, C.172, D.173, F.174, G.175 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.37, A:Y.42, A:A.58, A:K.60, A:I.62, A:Y.70, A:Y.70, A:L.162, A:L.162, A:L.162 Hydrogen bonds: A:K.60, A:D.112, A:M.114 Water bridges: A:D.173 Salt bridges: A:E.77, A:D.173 pi-Stacking: A:Y.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boga, S.B. et al., Discovery of 3(S)-thiomethyl pyrrolidine ERK inhibitors for oncology. Bioorg. Med. Chem. Lett. (2018)

Release Date

2018-05-23

Peptides

Mitogen-activated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 1

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