SMTL ID : 6crg.1 (1 other biounit)

Crystal Structure of Shp2 E76K GOF Mutant in complex with SHP099

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x 5OD: 6-(4-azanyl-4-methyl-piperidin-1-yl)-3-[2,3-bis(chloranyl)phenyl]pyrazin-2-amine(Non-covalent)

5OD.1: 16 residues within 4Å: Chain A: T.109, E.111, R.112, F.114, H.115, T.219, T.220, E.250, E.251, T.254, L.255, Q.258, D.490, P.492, K.493, Q.496 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.492, A:K.493 Hydrogen bonds: A:F.114, A:E.251 pi-Cation interactions: A:R.112 Halogen bonds: A:T.254

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: K.77, S.265, R.266, K.267, Q.270 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.266, A:R.266, A:Q.270 Water bridges: A:K.77 Salt bridges: A:K.77, A:R.266, A:K.267 SO4.3: 5 residues within 4Å: Chain A: E.111, R.112, W.113, K.199, Q.258 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.112, A:K.199 SO4.4: 5 residues within 4Å: Chain A: C.260, K.261, L.262, L.263, Y.264 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.261, A:L.263 Salt bridges: A:K.261 SO4.5: 3 residues within 4Å: Chain A: K.132, N.218, R.221 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.218 Salt bridges: A:K.132, A:R.221

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: N.350, R.352, N.411, E.413 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.352, A:R.352, A:E.413

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

LaRochelle, J.R. et al., Structural reorganization of SHP2 by oncogenic mutations and implications for oncoprotein resistance to allosteric inhibition. Nat Commun (2018)

Release Date

2018-11-07

Peptides

Tyrosine-protein phosphatase non-receptor type 11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein phosphatase non-receptor type 11

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