SMTL ID : 6csf.2 (1 other biounit)

Crystal structure of sodium/alanine symporter AgcS with D-alanine bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 7 residues within 4Å: Chain A: T.75, I.76, G.77, N.80, S.274, D.308 Ligands: DAL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.77, A:N.80, A:N.80, A:N.80

1 x DAL: D-ALANINE(Non-covalent)

DAL.2: 13 residues within 4Å: Chain A: A.74, T.75, I.76, G.77, T.78, G.79, N.80, I.165, Q.170, F.273, S.274, E.276 Ligands: NA.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.165, A:F.273 Hydrogen bonds: A:G.77, A:G.79, A:N.80, A:Q.170, A:S.274, A:S.274, A:E.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, J. et al., Structural basis for substrate binding and specificity of a sodium-alanine symporter AgcS. Proc. Natl. Acad. Sci. U.S.A. (2019)

Release Date

2019-01-30

Peptides

Sodium/alanine symporter AgcS: A
Monoclonal antibody FAB heavy chain: B
Monoclonal antibody FAB light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
H

C
L

Membrane

We predict this structure to be a membrane protein.
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Sodium/alanine symporter AgcS

Monoclonal antibody FAB heavy chain

Monoclonal antibody FAB light chain

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