SMTL ID : 6ctr.1

Ternary complex crystal structure of DNA polymerase Beta with a dideoxy terminated primer with CHF (R & S isomers), beta, gamma dCTP analogue

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.85 Å
Oligo State
monomer
Ligands
1 x DG- DT- DC- DG- DG: DNA (5'-D(P*GP*TP*CP*GP*G)-3')(Non-covalent)
2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
3 x NA: SODIUM ION(Non-functional Binders)
1 x CL: CHLORIDE ION(Non-functional Binders)
1 x F3C: 2'-deoxy-5'-O-[(R)-{[(R)-[(R)-fluoro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine(Non-covalent)
1 x FF4: 2'-deoxy-5'-O-[(R)-{[(R)-[(S)-fluoro(phosphono)methyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine(Non-covalent)
1 x DC: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Batra, V.K. et al., Mapping Functional Substrate-Enzyme Interactions in the pol beta Active Site through Chemical Biology: Structural Responses to Acidity Modification of Incoming dNTPs. Biochemistry (2018)
Release Date
2018-06-20
Peptides
DNA polymerase beta: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
C
A

DNA polymerase beta

Related Entries With Identical Sequence

6cr3.1 | 6cti.1 | 6ctj.1 | 6ctk.1 | 6ctl.1 | 6ctm.1 | 6ctn.1 | 6cto.1 | 6ctp.1 | 6ctq.1 | 6ctt.1 | 6ctu.1 | 6ctv.1 | 6ctw.1 | 6ctx.1