SMTL ID : 6cun.1

Engineered Cytochrome c from Rhodothermus marinus (Rma TDE) bound to carbene intermediate (1-ethoxy-1-oxopropan-2-ylidene)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

monomer

Ligands

1 x HEC: HEME C(Covalent)

HEC.1: 22 residues within 4Å: Chain A: Y.43, C.44, C.47, H.48, I.55, G.56, P.57, L.59, V.62, R.65, R.66, Y.70, T.74, M.75, M.88, L.91, V.92, Y.95, G.96, L.104, I.112 Ligands: CA1.2 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:P.57, A:L.59, A:L.59, A:V.62, A:T.74, A:L.91, A:L.91, A:Y.95, A:L.104, A:I.112, A:I.112 Hydrogen bonds: A:Y.70 Salt bridges: A:R.65, A:R.66 Metal complexes: A:H.48

1 x CA1: ETHYL PROPIONATE(Non-covalent)

CA1.2: 6 residues within 4Å: Chain A: H.48, T.74, P.78, I.82, M.88 Ligands: HEC.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.74, A:P.78, A:I.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lewis, R.D. et al., Catalytic iron-carbene intermediate revealed in a cytochromeccarbene transferase. Proc. Natl. Acad. Sci. U.S.A. (2018)

Release Date

2018-06-27

Peptides

Cytochrome c: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome c

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