SMTL ID : 6cw9.1

Structure of alpha-GC[8,16P] bound by CD1d and in complex with the Va14Vb8.2 TCR

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.00 Å
Oligo State
hetero-1-1-1-1-mer
Ligands
1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x PLM: PALMITIC ACID(Non-covalent)
1 x 7LM: N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxy-16-phenylhexadecan-2-yl]octanamide(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Wang, J. et al., A molecular switch in mouse CD1d modulates natural killer T cell activation by alpha-galactosylsphingamides. J.Biol.Chem. (2019)
Release Date
2019-04-03
Peptides
Chimeric T cell antigen receptor alpha chain. Va14,Va24,Ja18: A
Chimeric T cell antigen receptor beta chain Vb8.2, vb11: B
Antigen-presenting glycoprotein CD1d1: C
Beta-2-microglobulin: D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
D
C
A
D
B

Chimeric T cell antigen receptor alpha chain. Va14,Va24,Ja18

Chimeric T cell antigen receptor beta chain Vb8.2, vb11

Antigen-presenting glycoprotein CD1d1

Beta-2-microglobulin