SMTL ID : 6cwk.1

Anti-RTA VHH antibody

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.26 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: S.112, R.114 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.112 Water bridges: A:S.112, A:R.114 Salt bridges: A:R.114 SO4.2: 4 residues within 4Å: Chain A: R.74, D.75, N.76, A.77 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.75, A:D.75, A:N.76, A:A.77

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: S.7, G.8, G.9, T.123, Q.124 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.8, A:G.9, A:T.123 Water bridges: A:Q.124 EDO.4: 4 residues within 4Å: Chain A: R.45, D.113, R.114, W.119 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.45, A:R.45, A:D.113 Water bridges: A:W.119

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: Y.62, A.63, M.66, Q.67, G.68 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: F.37, S.111, S.112, D.113 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rudolph, M.J. et al., Contribution of an unusual CDR2 element of a single domain antibody in ricin toxin binding affinity and neutralizing activity. Protein Eng. Des. Sel. (2018)

Release Date

2019-01-16

Peptides

Anti-Ricin antibody: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Anti-Ricin antibody

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