SMTL ID : 6cwx.2 (1 other biounit)

Crystal structure of human ribonuclease P/MRP proteins Rpp20/Rpp25

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-24-24-mer

Ligands

48 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 3 residues within 4Å: Chain A: F.47, R.82, N.85 Ligand excluded by PLIP FMT.2: 3 residues within 4Å: Chain B: K.47, I.48 Chain h: R.49 Ligand excluded by PLIP FMT.5: 3 residues within 4Å: Chain C: F.47, R.82, N.85 Ligand excluded by PLIP FMT.6: 3 residues within 4Å: Chain D: K.47, I.48 Chain j: R.49 Ligand excluded by PLIP FMT.9: 3 residues within 4Å: Chain E: F.47, R.82, N.85 Ligand excluded by PLIP FMT.10: 3 residues within 4Å: Chain F: K.47, I.48 Chain l: R.49 Ligand excluded by PLIP FMT.13: 3 residues within 4Å: Chain G: F.47, R.82, N.85 Ligand excluded by PLIP FMT.14: 3 residues within 4Å: Chain H: K.47, I.48 Chain f: R.49 Ligand excluded by PLIP FMT.17: 3 residues within 4Å: Chain I: F.47, R.82, N.85 Ligand excluded by PLIP FMT.18: 3 residues within 4Å: Chain 7: R.49 Chain J: K.47, I.48 Ligand excluded by PLIP FMT.21: 3 residues within 4Å: Chain K: F.47, R.82, N.85 Ligand excluded by PLIP FMT.22: 3 residues within 4Å: Chain L: K.47, I.48 Chain d: R.49 Ligand excluded by PLIP FMT.25: 3 residues within 4Å: Chain M: F.47, R.82, N.85 Ligand excluded by PLIP FMT.26: 3 residues within 4Å: Chain N: K.47, I.48 Chain b: R.49 Ligand excluded by PLIP FMT.29: 3 residues within 4Å: Chain O: F.47, R.82, N.85 Ligand excluded by PLIP FMT.30: 3 residues within 4Å: Chain 9: R.49 Chain P: K.47, I.48 Ligand excluded by PLIP FMT.33: 3 residues within 4Å: Chain Q: F.47, R.82, N.85 Ligand excluded by PLIP FMT.34: 3 residues within 4Å: Chain 5: R.49 Chain R: K.47, I.48 Ligand excluded by PLIP FMT.37: 3 residues within 4Å: Chain S: F.47, R.82, N.85 Ligand excluded by PLIP FMT.38: 3 residues within 4Å: Chain T: K.47, I.48 Chain Z: R.49 Ligand excluded by PLIP FMT.41: 3 residues within 4Å: Chain U: F.47, R.82, N.85 Ligand excluded by PLIP FMT.42: 3 residues within 4Å: Chain 1: R.49 Chain V: K.47, I.48 Ligand excluded by PLIP FMT.45: 3 residues within 4Å: Chain W: F.47, R.82, N.85 Ligand excluded by PLIP FMT.46: 3 residues within 4Å: Chain 3: R.49 Chain X: K.47, I.48 Ligand excluded by PLIP FMT.49: 3 residues within 4Å: Chain Y: F.47, R.82, N.85 Ligand excluded by PLIP FMT.50: 3 residues within 4Å: Chain T: R.49 Chain Z: K.47, I.48 Ligand excluded by PLIP FMT.53: 3 residues within 4Å: Chain 0: F.47, R.82, N.85 Ligand excluded by PLIP FMT.54: 3 residues within 4Å: Chain 1: K.47, I.48 Chain V: R.49 Ligand excluded by PLIP FMT.57: 3 residues within 4Å: Chain 2: F.47, R.82, N.85 Ligand excluded by PLIP FMT.58: 3 residues within 4Å: Chain 3: K.47, I.48 Chain X: R.49 Ligand excluded by PLIP FMT.61: 3 residues within 4Å: Chain 4: F.47, R.82, N.85 Ligand excluded by PLIP FMT.62: 3 residues within 4Å: Chain 5: K.47, I.48 Chain R: R.49 Ligand excluded by PLIP FMT.65: 3 residues within 4Å: Chain 6: F.47, R.82, N.85 Ligand excluded by PLIP FMT.66: 3 residues within 4Å: Chain 7: K.47, I.48 Chain J: R.49 Ligand excluded by PLIP FMT.69: 3 residues within 4Å: Chain 8: F.47, R.82, N.85 Ligand excluded by PLIP FMT.70: 3 residues within 4Å: Chain 9: K.47, I.48 Chain P: R.49 Ligand excluded by PLIP FMT.73: 3 residues within 4Å: Chain a: F.47, R.82, N.85 Ligand excluded by PLIP FMT.74: 3 residues within 4Å: Chain N: R.49 Chain b: K.47, I.48 Ligand excluded by PLIP FMT.77: 3 residues within 4Å: Chain c: F.47, R.82, N.85 Ligand excluded by PLIP FMT.78: 3 residues within 4Å: Chain L: R.49 Chain d: K.47, I.48 Ligand excluded by PLIP FMT.81: 3 residues within 4Å: Chain e: F.47, R.82, N.85 Ligand excluded by PLIP FMT.82: 3 residues within 4Å: Chain H: R.49 Chain f: K.47, I.48 Ligand excluded by PLIP FMT.85: 3 residues within 4Å: Chain g: F.47, R.82, N.85 Ligand excluded by PLIP FMT.86: 3 residues within 4Å: Chain B: R.49 Chain h: K.47, I.48 Ligand excluded by PLIP FMT.89: 3 residues within 4Å: Chain i: F.47, R.82, N.85 Ligand excluded by PLIP FMT.90: 3 residues within 4Å: Chain D: R.49 Chain j: K.47, I.48 Ligand excluded by PLIP FMT.93: 3 residues within 4Å: Chain k: F.47, R.82, N.85 Ligand excluded by PLIP FMT.94: 3 residues within 4Å: Chain F: R.49 Chain l: K.47, I.48 Ligand excluded by PLIP

48 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain B: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.4 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain B: P.29, F.30, R.98, R.100 Ligands: SO4.3 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain D: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.8 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain D: P.29, F.30, R.98, R.100 Ligands: SO4.7 Ligand excluded by PLIP SO4.11: 6 residues within 4Å: Chain F: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.12 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain F: P.29, F.30, R.98, R.100 Ligands: SO4.11 Ligand excluded by PLIP SO4.15: 6 residues within 4Å: Chain H: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.16 Ligand excluded by PLIP SO4.16: 5 residues within 4Å: Chain H: P.29, F.30, R.98, R.100 Ligands: SO4.15 Ligand excluded by PLIP SO4.19: 6 residues within 4Å: Chain J: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.20 Ligand excluded by PLIP SO4.20: 5 residues within 4Å: Chain J: P.29, F.30, R.98, R.100 Ligands: SO4.19 Ligand excluded by PLIP SO4.23: 6 residues within 4Å: Chain L: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.24 Ligand excluded by PLIP SO4.24: 5 residues within 4Å: Chain L: P.29, F.30, R.98, R.100 Ligands: SO4.23 Ligand excluded by PLIP SO4.27: 6 residues within 4Å: Chain N: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.28 Ligand excluded by PLIP SO4.28: 5 residues within 4Å: Chain N: P.29, F.30, R.98, R.100 Ligands: SO4.27 Ligand excluded by PLIP SO4.31: 6 residues within 4Å: Chain P: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.32 Ligand excluded by PLIP SO4.32: 5 residues within 4Å: Chain P: P.29, F.30, R.98, R.100 Ligands: SO4.31 Ligand excluded by PLIP SO4.35: 6 residues within 4Å: Chain R: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.36 Ligand excluded by PLIP SO4.36: 5 residues within 4Å: Chain R: P.29, F.30, R.98, R.100 Ligands: SO4.35 Ligand excluded by PLIP SO4.39: 6 residues within 4Å: Chain T: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.40 Ligand excluded by PLIP SO4.40: 5 residues within 4Å: Chain T: P.29, F.30, R.98, R.100 Ligands: SO4.39 Ligand excluded by PLIP SO4.43: 6 residues within 4Å: Chain V: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.44 Ligand excluded by PLIP SO4.44: 5 residues within 4Å: Chain V: P.29, F.30, R.98, R.100 Ligands: SO4.43 Ligand excluded by PLIP SO4.47: 6 residues within 4Å: Chain X: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.48 Ligand excluded by PLIP SO4.48: 5 residues within 4Å: Chain X: P.29, F.30, R.98, R.100 Ligands: SO4.47 Ligand excluded by PLIP SO4.51: 6 residues within 4Å: Chain Z: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.52 Ligand excluded by PLIP SO4.52: 5 residues within 4Å: Chain Z: P.29, F.30, R.98, R.100 Ligands: SO4.51 Ligand excluded by PLIP SO4.55: 6 residues within 4Å: Chain 1: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.56 Ligand excluded by PLIP SO4.56: 5 residues within 4Å: Chain 1: P.29, F.30, R.98, R.100 Ligands: SO4.55 Ligand excluded by PLIP SO4.59: 6 residues within 4Å: Chain 3: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.60 Ligand excluded by PLIP SO4.60: 5 residues within 4Å: Chain 3: P.29, F.30, R.98, R.100 Ligands: SO4.59 Ligand excluded by PLIP SO4.63: 6 residues within 4Å: Chain 5: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.64 Ligand excluded by PLIP SO4.64: 5 residues within 4Å: Chain 5: P.29, F.30, R.98, R.100 Ligands: SO4.63 Ligand excluded by PLIP SO4.67: 6 residues within 4Å: Chain 7: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.68 Ligand excluded by PLIP SO4.68: 5 residues within 4Å: Chain 7: P.29, F.30, R.98, R.100 Ligands: SO4.67 Ligand excluded by PLIP SO4.71: 6 residues within 4Å: Chain 9: P.29, H.39, R.41, R.100, R.102 Ligands: SO4.72 Ligand excluded by PLIP SO4.72: 5 residues within 4Å: Chain 9: P.29, F.30, R.98, R.100 Ligands: SO4.71 Ligand excluded by PLIP SO4.75: 6 residues within 4Å: Ligands: SO4.76 Chain b: P.29, H.39, R.41, R.100, R.102 Ligand excluded by PLIP SO4.76: 5 residues within 4Å: Ligands: SO4.75 Chain b: P.29, F.30, R.98, R.100 Ligand excluded by PLIP SO4.79: 6 residues within 4Å: Ligands: SO4.80 Chain d: P.29, H.39, R.41, R.100, R.102 Ligand excluded by PLIP SO4.80: 5 residues within 4Å: Ligands: SO4.79 Chain d: P.29, F.30, R.98, R.100 Ligand excluded by PLIP SO4.83: 6 residues within 4Å: Ligands: SO4.84 Chain f: P.29, H.39, R.41, R.100, R.102 Ligand excluded by PLIP SO4.84: 5 residues within 4Å: Ligands: SO4.83 Chain f: P.29, F.30, R.98, R.100 Ligand excluded by PLIP SO4.87: 6 residues within 4Å: Ligands: SO4.88 Chain h: P.29, H.39, R.41, R.100, R.102 Ligand excluded by PLIP SO4.88: 5 residues within 4Å: Ligands: SO4.87 Chain h: P.29, F.30, R.98, R.100 Ligand excluded by PLIP SO4.91: 6 residues within 4Å: Ligands: SO4.92 Chain j: P.29, H.39, R.41, R.100, R.102 Ligand excluded by PLIP SO4.92: 5 residues within 4Å: Ligands: SO4.91 Chain j: P.29, F.30, R.98, R.100 Ligand excluded by PLIP SO4.95: 6 residues within 4Å: Ligands: SO4.96 Chain l: P.29, H.39, R.41, R.100, R.102 Ligand excluded by PLIP SO4.96: 5 residues within 4Å: Ligands: SO4.95 Chain l: P.29, F.30, R.98, R.100 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chan, C.W. et al., Crystal Structure of Human Rpp20/Rpp25 Reveals Quaternary Level Adaptation of the Alba Scaffold as Structural Basis for Single-stranded RNA Binding. J. Mol. Biol. (2018)

Release Date

2018-04-18

Peptides

Ribonuclease P protein subunit p20: ACEGIKMOQSUWY02468acegik
Ribonuclease P protein subunit p25: BDFHJLNPRTVXZ13579bdfhjl

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

M
A

O
A

Q
A

S
A

U
A

W
A

Y
A

0
A

2
A

4
A

6
A

8
A

a
A

c
A

e
A

g
A

i
A

k
A

B
B

D
B

F
B

H
B

J
B

L
B

N
B

P
B

R
B

T
B

V
B

X
B

Z
B

1
B

3
B

5
B

7
B

9
B

b
B

d
B

f
B

h
B

j
B

l
B

Ribonuclease P protein subunit p20

Ribonuclease P protein subunit p25

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