SMTL ID : 6cxd.1

Crystal structure of peptidase B from Yersinia pestis CO92 at 2.75 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-hexamer

Ligands

36 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: E.94, E.124, R.128, R.260, S.362, E.363, R.444 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: K.294, R.377, S.407, H.408 Ligand excluded by PLIP SO4.3: 9 residues within 4Å: Chain A: K.220, D.302, A.303, E.304, G.305, R.306, T.329, L.330, T.331 Ligand excluded by PLIP SO4.4: 8 residues within 4Å: Chain A: S.278, G.279 Chain C: F.224, S.226, N.275, M.276, V.277, S.278 Ligand excluded by PLIP SO4.5: 5 residues within 4Å: Chain A: N.280 Chain B: N.280 Chain C: N.280 Ligands: SO4.11, SO4.17 Ligand excluded by PLIP SO4.6: 5 residues within 4Å: Chain A: D.40, R.42, W.43, S.50, N.52 Ligand excluded by PLIP SO4.7: 7 residues within 4Å: Chain B: E.94, E.124, R.128, R.260, S.362, E.363, R.444 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain B: K.294, R.377, S.407, H.408 Ligand excluded by PLIP SO4.9: 9 residues within 4Å: Chain B: K.220, D.302, A.303, E.304, G.305, R.306, T.329, L.330, T.331 Ligand excluded by PLIP SO4.10: 8 residues within 4Å: Chain A: F.224, S.226, N.275, M.276, V.277, S.278 Chain B: S.278, G.279 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain A: N.280 Chain B: N.280 Chain C: N.280 Ligands: SO4.5, SO4.17 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain B: D.40, R.42, W.43, S.50, N.52 Ligand excluded by PLIP SO4.13: 7 residues within 4Å: Chain C: E.94, E.124, R.128, R.260, S.362, E.363, R.444 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain C: K.294, R.377, S.407, H.408 Ligand excluded by PLIP SO4.15: 9 residues within 4Å: Chain C: K.220, D.302, A.303, E.304, G.305, R.306, T.329, L.330, T.331 Ligand excluded by PLIP SO4.16: 8 residues within 4Å: Chain B: F.224, S.226, N.275, M.276, V.277, S.278 Chain C: S.278, G.279 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain A: N.280 Chain B: N.280 Chain C: N.280 Ligands: SO4.5, SO4.11 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain C: D.40, R.42, W.43, S.50, N.52 Ligand excluded by PLIP SO4.19: 7 residues within 4Å: Chain D: E.94, E.124, R.128, R.260, S.362, E.363, R.444 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain D: K.294, R.377, S.407, H.408 Ligand excluded by PLIP SO4.21: 9 residues within 4Å: Chain D: K.220, D.302, A.303, E.304, G.305, R.306, T.329, L.330, T.331 Ligand excluded by PLIP SO4.22: 8 residues within 4Å: Chain D: S.278, G.279 Chain F: F.224, S.226, N.275, M.276, V.277, S.278 Ligand excluded by PLIP SO4.23: 5 residues within 4Å: Chain D: N.280 Chain E: N.280 Chain F: N.280 Ligands: SO4.29, SO4.35 Ligand excluded by PLIP SO4.24: 5 residues within 4Å: Chain D: D.40, R.42, W.43, S.50, N.52 Ligand excluded by PLIP SO4.25: 7 residues within 4Å: Chain E: E.94, E.124, R.128, R.260, S.362, E.363, R.444 Ligand excluded by PLIP SO4.26: 4 residues within 4Å: Chain E: K.294, R.377, S.407, H.408 Ligand excluded by PLIP SO4.27: 9 residues within 4Å: Chain E: K.220, D.302, A.303, E.304, G.305, R.306, T.329, L.330, T.331 Ligand excluded by PLIP SO4.28: 8 residues within 4Å: Chain D: F.224, S.226, N.275, M.276, V.277, S.278 Chain E: S.278, G.279 Ligand excluded by PLIP SO4.29: 5 residues within 4Å: Chain D: N.280 Chain E: N.280 Chain F: N.280 Ligands: SO4.23, SO4.35 Ligand excluded by PLIP SO4.30: 5 residues within 4Å: Chain E: D.40, R.42, W.43, S.50, N.52 Ligand excluded by PLIP SO4.31: 7 residues within 4Å: Chain F: E.94, E.124, R.128, R.260, S.362, E.363, R.444 Ligand excluded by PLIP SO4.32: 4 residues within 4Å: Chain F: K.294, R.377, S.407, H.408 Ligand excluded by PLIP SO4.33: 9 residues within 4Å: Chain F: K.220, D.302, A.303, E.304, G.305, R.306, T.329, L.330, T.331 Ligand excluded by PLIP SO4.34: 8 residues within 4Å: Chain E: F.224, S.226, N.275, M.276, V.277, S.278 Chain F: S.278, G.279 Ligand excluded by PLIP SO4.35: 5 residues within 4Å: Chain D: N.280 Chain E: N.280 Chain F: N.280 Ligands: SO4.23, SO4.29 Ligand excluded by PLIP SO4.36: 5 residues within 4Å: Chain F: D.40, R.42, W.43, S.50, N.52 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shabalin, I.G. et al., Structural and biochemical analysis of Bacillus anthracis prephenate dehydrogenase reveals an unusual mode of inhibition by tyrosine via the ACT domain. Febs J. (2020)

Release Date

2018-04-18

Peptides

Peptidase B: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Peptidase B