SMTL ID : 6cxo.2 (2 other biounits)

Complement component-9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: D.195, H.197 No protein-ligand interaction detected (PLIP) ZN.6: 3 residues within 4Å: Chain A: H.358, F.362, N.363 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.358 ZN.7: 1 residues within 4Å: Chain A: H.526 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.526

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: L.96, N.99, D.101, D.103, D.109, E.110 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:L.96, A:D.101, A:D.103, A:D.109, A:E.110

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 6 residues within 4Å: Chain A: H.197, L.198, G.500, T.502, S.513, C.514 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.197, A:T.502 Water bridges: A:L.198

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 2 residues within 4Å: Chain A: N.205, D.215 No protein-ligand interaction detected (PLIP)

1 x BMA: beta-D-mannopyranose(Post Translational Modification)

BMA.5: 3 residues within 4Å: Chain A: P.26, W.27, R.42 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.27, A:R.42, A:R.42 Water bridges: A:S.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spicer, B.A. et al., The first transmembrane region of complement component-9 acts as a brake on its self-assembly. Nat Commun (2018)

Release Date

2018-09-05

Peptides

Complement component C9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Complement component C9

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