SMTL ID : 6cy6.1

Crystal structure of spermidine/spermine N-acetyltransferase SpeG from Escherichia coli in complex with tris(hydroxymethyl)aminomethane.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-12-mer

Ligands

96 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: E.13, R.14, E.15 Chain F: R.18 Ligand excluded by PLIP CL.2: 6 residues within 4Å: Chain A: V.29, M.30, R.31, Y.32, W.33, R.59 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: V.124, D.125, N.128 Ligands: MPD.16 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: R.31, F.150 Chain I: N.78, R.83 Ligands: MPD.12 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: R.14, F.41, S.45 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: R.136, S.141, V.142 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: Q.155, Y.156 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: R.14, E.15 Ligand excluded by PLIP CL.17: 4 residues within 4Å: Chain B: E.13, R.14, E.15 Chain D: R.18 Ligand excluded by PLIP CL.18: 6 residues within 4Å: Chain B: V.29, M.30, R.31, Y.32, W.33, R.59 Ligand excluded by PLIP CL.19: 4 residues within 4Å: Chain B: V.124, D.125, N.128 Ligands: MPD.32 Ligand excluded by PLIP CL.20: 5 residues within 4Å: Chain B: R.31, F.150 Chain H: N.78, R.83 Ligands: MPD.28 Ligand excluded by PLIP CL.21: 3 residues within 4Å: Chain B: R.14, F.41, S.45 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain B: R.136, S.141, V.142 Ligand excluded by PLIP CL.23: 2 residues within 4Å: Chain B: Q.155, Y.156 Ligand excluded by PLIP CL.24: 2 residues within 4Å: Chain B: R.14, E.15 Ligand excluded by PLIP CL.33: 4 residues within 4Å: Chain C: E.13, R.14, E.15 Chain E: R.18 Ligand excluded by PLIP CL.34: 6 residues within 4Å: Chain C: V.29, M.30, R.31, Y.32, W.33, R.59 Ligand excluded by PLIP CL.35: 4 residues within 4Å: Chain C: V.124, D.125, N.128 Ligands: MPD.48 Ligand excluded by PLIP CL.36: 5 residues within 4Å: Chain C: R.31, F.150 Chain G: N.78, R.83 Ligands: MPD.44 Ligand excluded by PLIP CL.37: 3 residues within 4Å: Chain C: R.14, F.41, S.45 Ligand excluded by PLIP CL.38: 3 residues within 4Å: Chain C: R.136, S.141, V.142 Ligand excluded by PLIP CL.39: 2 residues within 4Å: Chain C: Q.155, Y.156 Ligand excluded by PLIP CL.40: 2 residues within 4Å: Chain C: R.14, E.15 Ligand excluded by PLIP CL.49: 4 residues within 4Å: Chain C: R.18 Chain D: E.13, R.14, E.15 Ligand excluded by PLIP CL.50: 6 residues within 4Å: Chain D: V.29, M.30, R.31, Y.32, W.33, R.59 Ligand excluded by PLIP CL.51: 4 residues within 4Å: Chain D: V.124, D.125, N.128 Ligands: MPD.64 Ligand excluded by PLIP CL.52: 5 residues within 4Å: Chain D: R.31, F.150 Chain L: N.78, R.83 Ligands: MPD.60 Ligand excluded by PLIP CL.53: 3 residues within 4Å: Chain D: R.14, F.41, S.45 Ligand excluded by PLIP CL.54: 3 residues within 4Å: Chain D: R.136, S.141, V.142 Ligand excluded by PLIP CL.55: 2 residues within 4Å: Chain D: Q.155, Y.156 Ligand excluded by PLIP CL.56: 2 residues within 4Å: Chain D: R.14, E.15 Ligand excluded by PLIP CL.65: 4 residues within 4Å: Chain A: R.18 Chain E: E.13, R.14, E.15 Ligand excluded by PLIP CL.66: 6 residues within 4Å: Chain E: V.29, M.30, R.31, Y.32, W.33, R.59 Ligand excluded by PLIP CL.67: 4 residues within 4Å: Chain E: V.124, D.125, N.128 Ligands: MPD.80 Ligand excluded by PLIP CL.68: 5 residues within 4Å: Chain E: R.31, F.150 Chain K: N.78, R.83 Ligands: MPD.76 Ligand excluded by PLIP CL.69: 3 residues within 4Å: Chain E: R.14, F.41, S.45 Ligand excluded by PLIP CL.70: 3 residues within 4Å: Chain E: R.136, S.141, V.142 Ligand excluded by PLIP CL.71: 2 residues within 4Å: Chain E: Q.155, Y.156 Ligand excluded by PLIP CL.72: 2 residues within 4Å: Chain E: R.14, E.15 Ligand excluded by PLIP CL.81: 4 residues within 4Å: Chain B: R.18 Chain F: E.13, R.14, E.15 Ligand excluded by PLIP CL.82: 6 residues within 4Å: Chain F: V.29, M.30, R.31, Y.32, W.33, R.59 Ligand excluded by PLIP CL.83: 4 residues within 4Å: Chain F: V.124, D.125, N.128 Ligands: MPD.96 Ligand excluded by PLIP CL.84: 5 residues within 4Å: Chain F: R.31, F.150 Chain J: N.78, R.83 Ligands: MPD.92 Ligand excluded by PLIP CL.85: 3 residues within 4Å: Chain F: R.14, F.41, S.45 Ligand excluded by PLIP CL.86: 3 residues within 4Å: Chain F: R.136, S.141, V.142 Ligand excluded by PLIP CL.87: 2 residues within 4Å: Chain F: Q.155, Y.156 Ligand excluded by PLIP CL.88: 2 residues within 4Å: Chain F: R.14, E.15 Ligand excluded by PLIP CL.97: 4 residues within 4Å: Chain G: E.13, R.14, E.15 Chain L: R.18 Ligand excluded by PLIP CL.98: 6 residues within 4Å: Chain G: V.29, M.30, R.31, Y.32, W.33, R.59 Ligand excluded by PLIP CL.99: 4 residues within 4Å: Chain G: V.124, D.125, N.128 Ligands: MPD.112 Ligand excluded by PLIP CL.100: 5 residues within 4Å: Chain C: N.78, R.83 Chain G: R.31, F.150 Ligands: MPD.108 Ligand excluded by PLIP CL.101: 3 residues within 4Å: Chain G: R.14, F.41, S.45 Ligand excluded by PLIP CL.102: 3 residues within 4Å: Chain G: R.136, S.141, V.142 Ligand excluded by PLIP CL.103: 2 residues within 4Å: Chain G: Q.155, Y.156 Ligand excluded by PLIP CL.104: 2 residues within 4Å: Chain G: R.14, E.15 Ligand excluded by PLIP CL.113: 4 residues within 4Å: Chain H: E.13, R.14, E.15 Chain J: R.18 Ligand excluded by PLIP CL.114: 6 residues within 4Å: Chain H: V.29, M.30, R.31, Y.32, W.33, R.59 Ligand excluded by PLIP CL.115: 4 residues within 4Å: Chain H: V.124, D.125, N.128 Ligands: MPD.128 Ligand excluded by PLIP CL.116: 5 residues within 4Å: Chain B: N.78, R.83 Chain H: R.31, F.150 Ligands: MPD.124 Ligand excluded by PLIP CL.117: 3 residues within 4Å: Chain H: R.14, F.41, S.45 Ligand excluded by PLIP CL.118: 3 residues within 4Å: Chain H: R.136, S.141, V.142 Ligand excluded by PLIP CL.119: 2 residues within 4Å: Chain H: Q.155, Y.156 Ligand excluded by PLIP CL.120: 2 residues within 4Å: Chain H: R.14, E.15 Ligand excluded by PLIP CL.129: 4 residues within 4Å: Chain I: E.13, R.14, E.15 Chain K: R.18 Ligand excluded by PLIP CL.130: 6 residues within 4Å: Chain I: V.29, M.30, R.31, Y.32, W.33, R.59 Ligand excluded by PLIP CL.131: 4 residues within 4Å: Chain I: V.124, D.125, N.128 Ligands: MPD.144 Ligand excluded by PLIP CL.132: 5 residues within 4Å: Chain A: N.78, R.83 Chain I: R.31, F.150 Ligands: MPD.140 Ligand excluded by PLIP CL.133: 3 residues within 4Å: Chain I: R.14, F.41, S.45 Ligand excluded by PLIP CL.134: 3 residues within 4Å: Chain I: R.136, S.141, V.142 Ligand excluded by PLIP CL.135: 2 residues within 4Å: Chain I: Q.155, Y.156 Ligand excluded by PLIP CL.136: 2 residues within 4Å: Chain I: R.14, E.15 Ligand excluded by PLIP CL.145: 4 residues within 4Å: Chain I: R.18 Chain J: E.13, R.14, E.15 Ligand excluded by PLIP CL.146: 6 residues within 4Å: Chain J: V.29, M.30, R.31, Y.32, W.33, R.59 Ligand excluded by PLIP CL.147: 4 residues within 4Å: Chain J: V.124, D.125, N.128 Ligands: MPD.160 Ligand excluded by PLIP CL.148: 5 residues within 4Å: Chain F: N.78, R.83 Chain J: R.31, F.150 Ligands: MPD.156 Ligand excluded by PLIP CL.149: 3 residues within 4Å: Chain J: R.14, F.41, S.45 Ligand excluded by PLIP CL.150: 3 residues within 4Å: Chain J: R.136, S.141, V.142 Ligand excluded by PLIP CL.151: 2 residues within 4Å: Chain J: Q.155, Y.156 Ligand excluded by PLIP CL.152: 2 residues within 4Å: Chain J: R.14, E.15 Ligand excluded by PLIP CL.161: 4 residues within 4Å: Chain G: R.18 Chain K: E.13, R.14, E.15 Ligand excluded by PLIP CL.162: 6 residues within 4Å: Chain K: V.29, M.30, R.31, Y.32, W.33, R.59 Ligand excluded by PLIP CL.163: 4 residues within 4Å: Chain K: V.124, D.125, N.128 Ligands: MPD.176 Ligand excluded by PLIP CL.164: 5 residues within 4Å: Chain E: N.78, R.83 Chain K: R.31, F.150 Ligands: MPD.172 Ligand excluded by PLIP CL.165: 3 residues within 4Å: Chain K: R.14, F.41, S.45 Ligand excluded by PLIP CL.166: 3 residues within 4Å: Chain K: R.136, S.141, V.142 Ligand excluded by PLIP CL.167: 2 residues within 4Å: Chain K: Q.155, Y.156 Ligand excluded by PLIP CL.168: 2 residues within 4Å: Chain K: R.14, E.15 Ligand excluded by PLIP CL.177: 4 residues within 4Å: Chain H: R.18 Chain L: E.13, R.14, E.15 Ligand excluded by PLIP CL.178: 6 residues within 4Å: Chain L: V.29, M.30, R.31, Y.32, W.33, R.59 Ligand excluded by PLIP CL.179: 4 residues within 4Å: Chain L: V.124, D.125, N.128 Ligands: MPD.192 Ligand excluded by PLIP CL.180: 5 residues within 4Å: Chain D: N.78, R.83 Chain L: R.31, F.150 Ligands: MPD.188 Ligand excluded by PLIP CL.181: 3 residues within 4Å: Chain L: R.14, F.41, S.45 Ligand excluded by PLIP CL.182: 3 residues within 4Å: Chain L: R.136, S.141, V.142 Ligand excluded by PLIP CL.183: 2 residues within 4Å: Chain L: Q.155, Y.156 Ligand excluded by PLIP CL.184: 2 residues within 4Å: Chain L: R.14, E.15 Ligand excluded by PLIP

12 x NA: SODIUM ION(Non-functional Binders)

NA.9: 4 residues within 4Å: Chain A: D.54, E.57, R.58 Chain F: E.36 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:E.36 NA.25: 4 residues within 4Å: Chain B: D.54, E.57, R.58 Chain D: E.36 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.36 NA.41: 4 residues within 4Å: Chain C: D.54, E.57, R.58 Chain E: E.36 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.54 NA.57: 4 residues within 4Å: Chain C: E.36 Chain D: D.54, E.57, R.58 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.57 NA.73: 4 residues within 4Å: Chain A: E.36 Chain E: D.54, E.57, R.58 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:E.57 NA.89: 4 residues within 4Å: Chain B: E.36 Chain F: D.54, E.57, R.58 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:D.54 NA.105: 4 residues within 4Å: Chain G: D.54, E.57, R.58 Chain L: E.36 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:E.36 NA.121: 4 residues within 4Å: Chain H: D.54, E.57, R.58 Chain J: E.36 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:E.36 NA.137: 4 residues within 4Å: Chain I: D.54, E.57, R.58 Chain K: E.36 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:E.57 NA.153: 4 residues within 4Å: Chain I: E.36 Chain J: D.54, E.57, R.58 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:E.57 NA.169: 4 residues within 4Å: Chain G: E.36 Chain K: D.54, E.57, R.58 No protein-ligand interaction detected (PLIP) NA.185: 4 residues within 4Å: Chain H: E.36 Chain L: D.54, E.57, R.58 1 PLIP interactions: 1 interactions with chain L Hydrogen bonds: L:D.54

12 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.10: 8 residues within 4Å: Chain A: Y.32, W.33, H.51, D.54, S.56, E.57, V.75, E.76 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.32, A:D.54, A:E.57, A:E.76 Water bridges: A:E.76, A:E.76, A:E.76, A:E.76 TRS.26: 8 residues within 4Å: Chain B: Y.32, W.33, H.51, D.54, S.56, E.57, V.75, E.76 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Y.32, B:D.54, B:E.57, B:E.76 Water bridges: B:E.76, B:E.76, B:E.76, B:E.76 TRS.42: 8 residues within 4Å: Chain C: Y.32, W.33, H.51, D.54, S.56, E.57, V.75, E.76 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:Y.32, C:D.54, C:E.57, C:E.76 Water bridges: C:E.76, C:E.76, C:E.76, C:E.76 TRS.58: 8 residues within 4Å: Chain D: Y.32, W.33, H.51, D.54, S.56, E.57, V.75, E.76 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:Y.32, D:D.54, D:E.57, D:E.76 Water bridges: D:E.76, D:E.76, D:E.76, D:E.76 TRS.74: 8 residues within 4Å: Chain E: Y.32, W.33, H.51, D.54, S.56, E.57, V.75, E.76 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:Y.32, E:D.54, E:E.57, E:E.76 Water bridges: E:E.76, E:E.76, E:E.76, E:E.76 TRS.90: 8 residues within 4Å: Chain F: Y.32, W.33, H.51, D.54, S.56, E.57, V.75, E.76 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:Y.32, F:D.54, F:E.57, F:E.76 Water bridges: F:E.76, F:E.76, F:E.76, F:E.76 TRS.106: 8 residues within 4Å: Chain G: Y.32, W.33, H.51, D.54, S.56, E.57, V.75, E.76 8 PLIP interactions: 8 interactions with chain G Hydrogen bonds: G:Y.32, G:D.54, G:E.76, G:E.76 Water bridges: G:E.76, G:E.76, G:E.76, G:E.76 TRS.122: 8 residues within 4Å: Chain H: Y.32, W.33, H.51, D.54, S.56, E.57, V.75, E.76 8 PLIP interactions: 8 interactions with chain H Hydrogen bonds: H:Y.32, H:D.54, H:E.76, H:E.76 Water bridges: H:E.76, H:E.76, H:E.76, H:E.76 TRS.138: 8 residues within 4Å: Chain I: Y.32, W.33, H.51, D.54, S.56, E.57, V.75, E.76 8 PLIP interactions: 8 interactions with chain I Hydrogen bonds: I:Y.32, I:D.54, I:E.76, I:E.76 Water bridges: I:E.76, I:E.76, I:E.76, I:E.76 TRS.154: 8 residues within 4Å: Chain J: Y.32, W.33, H.51, D.54, S.56, E.57, V.75, E.76 8 PLIP interactions: 8 interactions with chain J Hydrogen bonds: J:Y.32, J:D.54, J:E.76, J:E.76 Water bridges: J:E.76, J:E.76, J:E.76, J:E.76 TRS.170: 8 residues within 4Å: Chain K: Y.32, W.33, H.51, D.54, S.56, E.57, V.75, E.76 8 PLIP interactions: 8 interactions with chain K Hydrogen bonds: K:Y.32, K:D.54, K:E.76, K:E.76 Water bridges: K:E.76, K:E.76, K:E.76, K:E.76 TRS.186: 8 residues within 4Å: Chain L: Y.32, W.33, H.51, D.54, S.56, E.57, V.75, E.76 8 PLIP interactions: 8 interactions with chain L Hydrogen bonds: L:Y.32, L:D.54, L:E.76, L:E.76 Water bridges: L:E.76, L:E.76, L:E.76, L:E.76

24 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.11: 8 residues within 4Å: Chain A: P.11, L.12, Y.48, H.51, E.57, R.58, R.59 Chain F: A.40 Ligand excluded by PLIP MRD.13: 4 residues within 4Å: Chain A: Q.95, A.100, N.128, Y.135 Ligand excluded by PLIP MRD.27: 8 residues within 4Å: Chain B: P.11, L.12, Y.48, H.51, E.57, R.58, R.59 Chain D: A.40 Ligand excluded by PLIP MRD.29: 4 residues within 4Å: Chain B: Q.95, A.100, N.128, Y.135 Ligand excluded by PLIP MRD.43: 8 residues within 4Å: Chain C: P.11, L.12, Y.48, H.51, E.57, R.58, R.59 Chain E: A.40 Ligand excluded by PLIP MRD.45: 4 residues within 4Å: Chain C: Q.95, A.100, N.128, Y.135 Ligand excluded by PLIP MRD.59: 8 residues within 4Å: Chain C: A.40 Chain D: P.11, L.12, Y.48, H.51, E.57, R.58, R.59 Ligand excluded by PLIP MRD.61: 4 residues within 4Å: Chain D: Q.95, A.100, N.128, Y.135 Ligand excluded by PLIP MRD.75: 8 residues within 4Å: Chain A: A.40 Chain E: P.11, L.12, Y.48, H.51, E.57, R.58, R.59 Ligand excluded by PLIP MRD.77: 4 residues within 4Å: Chain E: Q.95, A.100, N.128, Y.135 Ligand excluded by PLIP MRD.91: 8 residues within 4Å: Chain B: A.40 Chain F: P.11, L.12, Y.48, H.51, E.57, R.58, R.59 Ligand excluded by PLIP MRD.93: 4 residues within 4Å: Chain F: Q.95, A.100, N.128, Y.135 Ligand excluded by PLIP MRD.107: 8 residues within 4Å: Chain G: P.11, L.12, Y.48, H.51, E.57, R.58, R.59 Chain L: A.40 Ligand excluded by PLIP MRD.109: 4 residues within 4Å: Chain G: Q.95, A.100, N.128, Y.135 Ligand excluded by PLIP MRD.123: 8 residues within 4Å: Chain H: P.11, L.12, Y.48, H.51, E.57, R.58, R.59 Chain J: A.40 Ligand excluded by PLIP MRD.125: 4 residues within 4Å: Chain H: Q.95, A.100, N.128, Y.135 Ligand excluded by PLIP MRD.139: 8 residues within 4Å: Chain I: P.11, L.12, Y.48, H.51, E.57, R.58, R.59 Chain K: A.40 Ligand excluded by PLIP MRD.141: 4 residues within 4Å: Chain I: Q.95, A.100, N.128, Y.135 Ligand excluded by PLIP MRD.155: 8 residues within 4Å: Chain I: A.40 Chain J: P.11, L.12, Y.48, H.51, E.57, R.58, R.59 Ligand excluded by PLIP MRD.157: 4 residues within 4Å: Chain J: Q.95, A.100, N.128, Y.135 Ligand excluded by PLIP MRD.171: 8 residues within 4Å: Chain G: A.40 Chain K: P.11, L.12, Y.48, H.51, E.57, R.58, R.59 Ligand excluded by PLIP MRD.173: 4 residues within 4Å: Chain K: Q.95, A.100, N.128, Y.135 Ligand excluded by PLIP MRD.187: 8 residues within 4Å: Chain H: A.40 Chain L: P.11, L.12, Y.48, H.51, E.57, R.58, R.59 Ligand excluded by PLIP MRD.189: 4 residues within 4Å: Chain L: Q.95, A.100, N.128, Y.135 Ligand excluded by PLIP

48 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.12: 10 residues within 4Å: Chain A: R.31, Y.32, E.35 Chain I: S.56, E.76, I.77, N.78, R.83 Ligands: CL.4, MPD.14 Ligand excluded by PLIP MPD.14: 11 residues within 4Å: Chain A: Y.32, E.85, I.123, L.146, E.149, F.150, R.161 Chain I: R.83, Y.121, R.161 Ligands: MPD.12 Ligand excluded by PLIP MPD.15: 5 residues within 4Å: Chain A: K.126, V.142, G.144, E.145, I.160 Ligand excluded by PLIP MPD.16: 6 residues within 4Å: Chain A: I.123, D.125, F.150, N.158, A.159 Ligands: CL.3 Ligand excluded by PLIP MPD.28: 10 residues within 4Å: Chain B: R.31, Y.32, E.35 Chain H: S.56, E.76, I.77, N.78, R.83 Ligands: CL.20, MPD.30 Ligand excluded by PLIP MPD.30: 11 residues within 4Å: Chain B: Y.32, E.85, I.123, L.146, E.149, F.150, R.161 Chain H: R.83, Y.121, R.161 Ligands: MPD.28 Ligand excluded by PLIP MPD.31: 5 residues within 4Å: Chain B: K.126, V.142, G.144, E.145, I.160 Ligand excluded by PLIP MPD.32: 6 residues within 4Å: Chain B: I.123, D.125, F.150, N.158, A.159 Ligands: CL.19 Ligand excluded by PLIP MPD.44: 10 residues within 4Å: Chain C: R.31, Y.32, E.35 Chain G: S.56, E.76, I.77, N.78, R.83 Ligands: CL.36, MPD.46 Ligand excluded by PLIP MPD.46: 11 residues within 4Å: Chain C: Y.32, E.85, I.123, L.146, E.149, F.150, R.161 Chain G: R.83, Y.121, R.161 Ligands: MPD.44 Ligand excluded by PLIP MPD.47: 5 residues within 4Å: Chain C: K.126, V.142, G.144, E.145, I.160 Ligand excluded by PLIP MPD.48: 6 residues within 4Å: Chain C: I.123, D.125, F.150, N.158, A.159 Ligands: CL.35 Ligand excluded by PLIP MPD.60: 10 residues within 4Å: Chain D: R.31, Y.32, E.35 Chain L: S.56, E.76, I.77, N.78, R.83 Ligands: CL.52, MPD.62 Ligand excluded by PLIP MPD.62: 11 residues within 4Å: Chain D: Y.32, E.85, I.123, L.146, E.149, F.150, R.161 Chain L: R.83, Y.121, R.161 Ligands: MPD.60 Ligand excluded by PLIP MPD.63: 5 residues within 4Å: Chain D: K.126, V.142, G.144, E.145, I.160 Ligand excluded by PLIP MPD.64: 6 residues within 4Å: Chain D: I.123, D.125, F.150, N.158, A.159 Ligands: CL.51 Ligand excluded by PLIP MPD.76: 10 residues within 4Å: Chain E: R.31, Y.32, E.35 Chain K: S.56, E.76, I.77, N.78, R.83 Ligands: CL.68, MPD.78 Ligand excluded by PLIP MPD.78: 11 residues within 4Å: Chain E: Y.32, E.85, I.123, L.146, E.149, F.150, R.161 Chain K: R.83, Y.121, R.161 Ligands: MPD.76 Ligand excluded by PLIP MPD.79: 5 residues within 4Å: Chain E: K.126, V.142, G.144, E.145, I.160 Ligand excluded by PLIP MPD.80: 6 residues within 4Å: Chain E: I.123, D.125, F.150, N.158, A.159 Ligands: CL.67 Ligand excluded by PLIP MPD.92: 10 residues within 4Å: Chain F: R.31, Y.32, E.35 Chain J: S.56, E.76, I.77, N.78, R.83 Ligands: CL.84, MPD.94 Ligand excluded by PLIP MPD.94: 11 residues within 4Å: Chain F: Y.32, E.85, I.123, L.146, E.149, F.150, R.161 Chain J: R.83, Y.121, R.161 Ligands: MPD.92 Ligand excluded by PLIP MPD.95: 5 residues within 4Å: Chain F: K.126, V.142, G.144, E.145, I.160 Ligand excluded by PLIP MPD.96: 6 residues within 4Å: Chain F: I.123, D.125, F.150, N.158, A.159 Ligands: CL.83 Ligand excluded by PLIP MPD.108: 10 residues within 4Å: Chain C: S.56, E.76, I.77, N.78, R.83 Chain G: R.31, Y.32, E.35 Ligands: CL.100, MPD.110 Ligand excluded by PLIP MPD.110: 11 residues within 4Å: Chain C: R.83, Y.121, R.161 Chain G: Y.32, E.85, I.123, L.146, E.149, F.150, R.161 Ligands: MPD.108 Ligand excluded by PLIP MPD.111: 5 residues within 4Å: Chain G: K.126, V.142, G.144, E.145, I.160 Ligand excluded by PLIP MPD.112: 6 residues within 4Å: Chain G: I.123, D.125, F.150, N.158, A.159 Ligands: CL.99 Ligand excluded by PLIP MPD.124: 10 residues within 4Å: Chain B: S.56, E.76, I.77, N.78, R.83 Chain H: R.31, Y.32, E.35 Ligands: CL.116, MPD.126 Ligand excluded by PLIP MPD.126: 11 residues within 4Å: Chain B: R.83, Y.121, R.161 Chain H: Y.32, E.85, I.123, L.146, E.149, F.150, R.161 Ligands: MPD.124 Ligand excluded by PLIP MPD.127: 5 residues within 4Å: Chain H: K.126, V.142, G.144, E.145, I.160 Ligand excluded by PLIP MPD.128: 6 residues within 4Å: Chain H: I.123, D.125, F.150, N.158, A.159 Ligands: CL.115 Ligand excluded by PLIP MPD.140: 10 residues within 4Å: Chain A: S.56, E.76, I.77, N.78, R.83 Chain I: R.31, Y.32, E.35 Ligands: CL.132, MPD.142 Ligand excluded by PLIP MPD.142: 11 residues within 4Å: Chain A: R.83, Y.121, R.161 Chain I: Y.32, E.85, I.123, L.146, E.149, F.150, R.161 Ligands: MPD.140 Ligand excluded by PLIP MPD.143: 5 residues within 4Å: Chain I: K.126, V.142, G.144, E.145, I.160 Ligand excluded by PLIP MPD.144: 6 residues within 4Å: Chain I: I.123, D.125, F.150, N.158, A.159 Ligands: CL.131 Ligand excluded by PLIP MPD.156: 10 residues within 4Å: Chain F: S.56, E.76, I.77, N.78, R.83 Chain J: R.31, Y.32, E.35 Ligands: CL.148, MPD.158 Ligand excluded by PLIP MPD.158: 11 residues within 4Å: Chain F: R.83, Y.121, R.161 Chain J: Y.32, E.85, I.123, L.146, E.149, F.150, R.161 Ligands: MPD.156 Ligand excluded by PLIP MPD.159: 5 residues within 4Å: Chain J: K.126, V.142, G.144, E.145, I.160 Ligand excluded by PLIP MPD.160: 6 residues within 4Å: Chain J: I.123, D.125, F.150, N.158, A.159 Ligands: CL.147 Ligand excluded by PLIP MPD.172: 10 residues within 4Å: Chain E: S.56, E.76, I.77, N.78, R.83 Chain K: R.31, Y.32, E.35 Ligands: CL.164, MPD.174 Ligand excluded by PLIP MPD.174: 11 residues within 4Å: Chain E: R.83, Y.121, R.161 Chain K: Y.32, E.85, I.123, L.146, E.149, F.150, R.161 Ligands: MPD.172 Ligand excluded by PLIP MPD.175: 5 residues within 4Å: Chain K: K.126, V.142, G.144, E.145, I.160 Ligand excluded by PLIP MPD.176: 6 residues within 4Å: Chain K: I.123, D.125, F.150, N.158, A.159 Ligands: CL.163 Ligand excluded by PLIP MPD.188: 10 residues within 4Å: Chain D: S.56, E.76, I.77, N.78, R.83 Chain L: R.31, Y.32, E.35 Ligands: CL.180, MPD.190 Ligand excluded by PLIP MPD.190: 11 residues within 4Å: Chain D: R.83, Y.121, R.161 Chain L: Y.32, E.85, I.123, L.146, E.149, F.150, R.161 Ligands: MPD.188 Ligand excluded by PLIP MPD.191: 5 residues within 4Å: Chain L: K.126, V.142, G.144, E.145, I.160 Ligand excluded by PLIP MPD.192: 6 residues within 4Å: Chain L: I.123, D.125, F.150, N.158, A.159 Ligands: CL.179 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filippova, E.V. et al., Analysis of crystalline and solution states of ligand-free spermidine N-acetyltransferase (SpeG) from Escherichia coli. Acta Crystallogr D Struct Biol (2019)

Release Date

2018-04-18

Peptides

Spermidine N(1)-acetyltransferase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

Spermidine N(1)-acetyltransferase