SMTL ID : 6cz1.1 (1 other biounit)

Crystal structure of ATPase domain of Human GRP78 bound to Ver155008

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

1 x 3FD: 4-[[(2R,3S,4R,5R)-5-[6-amino-8-[(3,4-dichlorophenyl)methylamino]purin-9-yl]-3,4-dihydroxy-oxolan-2-yl]methoxymethyl]benzonitrile(Non-covalent)

3FD.1: 14 residues within 4Å: Chain A: Y.14, N.34, I.36, G.202, G.230, E.268, K.271, R.272, S.275, G.339, S.340, R.342, I.343, D.366 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.14, A:I.36 Hydrogen bonds: A:N.34, A:K.271, A:K.271, A:S.275, A:S.275, A:R.342 Water bridges: A:I.36

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: D.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Antoshchenko, T. et al., Crystallographic selection of adenosine analogs that fit the mold of the active site of human GRP78 and beyond. To be Published

Release Date

2019-04-10

Peptides

Endoplasmic reticulum chaperone BiP: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endoplasmic reticulum chaperone BiP

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