SMTL ID : 6d00.1

Calcarisporiella thermophila Hsp104

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

12 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 11 residues within 4Å: Chain A: V.180, P.208, G.209, V.210, G.211, K.212, T.213, A.214, I.346, P.384, D.385 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.209, A:G.211, A:K.212, A:T.213, A:T.213, A:D.385 Salt bridges: A:K.212 ADP.2: 15 residues within 4Å: Chain A: H.571, T.609, C.611, G.612, K.613, T.614, L.615, R.633, D.679, I.776, R.780, A.816, R.817, L.819 Chain F: E.304 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:H.571, A:T.614, A:R.633, A:D.679, A:D.679, A:R.780, A:R.817 Salt bridges: A:R.817 ADP.3: 15 residues within 4Å: Chain A: R.328 Chain B: P.179, V.180, I.181, R.183, P.208, G.209, G.211, K.212, T.213, A.214, I.346, L.350, P.384, D.385 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:I.181, B:I.181, B:P.208, B:G.209, B:G.211, B:K.212, B:T.213, B:T.213, B:T.213, B:D.385 Salt bridges: A:R.328, A:R.328 ADP.4: 13 residues within 4Å: Chain A: E.754 Chain B: V.572, V.573, T.609, G.610, G.612, K.613, T.614, L.615, I.776, R.780, R.817, N.820 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:V.573, B:V.573, B:G.610, B:K.613, B:T.614, B:T.614, B:T.614, B:L.615, B:R.780, B:R.780, B:N.820 Salt bridges: B:K.613, B:R.817, B:R.817 ADP.5: 14 residues within 4Å: Chain B: R.328 Chain C: P.179, V.180, I.181, R.183, G.209, G.211, K.212, T.213, A.214, I.346, L.350, P.384, D.385 11 PLIP interactions: 9 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:I.181, C:I.181, C:G.211, C:K.212, C:T.213, C:T.213, C:T.213, C:D.385, C:D.385 Salt bridges: B:R.328, B:R.328 ADP.6: 11 residues within 4Å: Chain C: V.573, T.609, G.610, C.611, G.612, K.613, T.614, L.615, I.776, R.780, R.817 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:V.573, C:V.573, C:G.610, C:C.611, C:G.612, C:K.613, C:T.614, C:R.780, C:R.780 Salt bridges: C:K.613, C:R.817 ADP.7: 15 residues within 4Å: Chain C: P.324, E.327, R.328 Chain D: V.180, R.183, G.211, K.212, T.213, A.214, I.346, L.350, R.381, P.384, D.385, I.388 11 PLIP interactions: 8 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:R.183, D:G.211, D:K.212, D:T.213, D:T.213, D:T.213, D:A.214, C:E.327 Salt bridges: D:R.381, C:R.328, C:R.328 ADP.8: 13 residues within 4Å: Chain D: V.573, T.609, G.610, C.611, G.612, K.613, T.614, L.615, L.768, R.780, A.816, R.817, N.820 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:V.573, D:G.610, D:C.611, D:C.611, D:G.612, D:K.613, D:T.614, D:T.614, D:T.614, D:R.780, D:R.817, D:N.820 Salt bridges: D:R.817 ADP.9: 11 residues within 4Å: Chain D: P.324, R.328 Chain E: G.211, K.212, T.213, A.214, E.217, I.346, L.350, P.384, D.385 7 PLIP interactions: 5 interactions with chain E, 2 interactions with chain D Hydrogen bonds: E:G.211, E:K.212, E:T.213, E:T.213, E:E.217, D:P.324 Salt bridges: D:R.328 ADP.10: 15 residues within 4Å: Chain D: E.754, R.758 Chain E: H.571, V.573, T.609, G.610, G.612, K.613, T.614, L.615, I.776, R.780, A.816, R.817, N.820 13 PLIP interactions: 12 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:V.573, E:V.573, E:G.610, E:K.613, E:T.614, E:T.614, E:T.614, E:L.615, E:N.820, D:R.758 Salt bridges: E:K.613, E:R.817, E:R.817 ADP.11: 17 residues within 4Å: Chain E: P.324, R.328 Chain F: P.179, V.180, I.181, R.183, G.209, V.210, G.211, K.212, T.213, A.214, E.217, I.346, L.350, P.384, D.385 12 PLIP interactions: 10 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:I.181, F:I.181, F:G.211, F:K.212, F:T.213, F:T.213, F:E.217, F:D.385, F:D.385 Salt bridges: F:K.212, E:R.328, E:R.328 ADP.12: 15 residues within 4Å: Chain E: N.753 Chain F: V.573, Q.575, T.609, G.610, C.611, G.612, K.613, T.614, N.721, L.768, I.776, R.780, A.816, R.817 11 PLIP interactions: 11 interactions with chain F Hydrogen bonds: F:V.573, F:G.610, F:C.611, F:G.612, F:K.613, F:T.614, F:N.721, F:R.780 Salt bridges: F:K.613, F:R.817, F:R.817

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Michalska, K. et al., Structure of Calcarisporiella thermophila Hsp104 Disaggregase that Antagonizes Diverse Proteotoxic Misfolding Events. Structure (2019)

Release Date

2019-04-03

Peptides

Calcarisporiella thermophila Hsp104: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

D
4

E
5

F
6

Calcarisporiella thermophila Hsp104