SMTL ID : 6d06.2 (1 other biounit)

Human ADAR2d E488Y mutant complexed with dsRNA containing an abasic site opposite the edited base

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.1: 19 residues within 4Å: Chain A: N.93, D.94, I.99, R.102, R.103, T.215, K.221, R.224, G.232, S.233, K.331, Y.360, K.364, Y.370, K.374, W.389, E.391, K.392, D.397 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:S.233, A:E.391, A:K.392 Salt bridges: A:R.102, A:R.103, A:R.103, A:K.221, A:K.221, A:R.224, A:R.224, A:R.224, A:K.331, A:K.364, A:K.364, A:K.364, A:K.374, A:K.392, A:K.392

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.96, E.98, C.153, K.185, C.218 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.96, A:C.153, A:C.218, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Monteleone, L.R. et al., A Bump-Hole Approach for Directed RNA Editing. Cell Chem Biol (2019)

Release Date

2019-02-20

Peptides

Double-stranded RNA-specific editase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Double-stranded RNA-specific editase 1

Related Entries With Identical Sequence