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SMTL ID : 6d14.1
Zebrafish TRAP1 bound to AMPPNP and calcium in the asymmetric closed state
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.50 Å
Oligo State
homo-dimer
Ligands
2 x
ANP
:
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
(Non-covalent)
ANP.1:
22 residues within 4Å:
Chain A:
E.46
,
N.50
,
A.54
,
K.57
,
D.89
,
M.94
,
N.102
,
L.103
,
R.108
,
S.109
,
G.110
,
S.111
,
G.130
,
Q.131
,
F.132
,
G.133
,
V.134
,
G.135
,
F.136
,
T.182
,
R.333
Ligands:
CA.2
25
PLIP interactions
:
25 interactions with chain A
Hydrogen bonds:
A:N.50
,
A:K.57
,
A:D.89
,
A:S.109
,
A:S.109
,
A:S.109
,
A:G.110
,
A:S.111
,
A:S.111
,
A:Q.131
,
A:F.132
,
A:G.133
,
A:V.134
,
A:G.135
,
A:F.136
,
A:R.333
,
A:R.333
Water bridges:
A:D.53
,
A:D.89
,
A:D.89
,
A:D.89
,
A:N.102
,
A:S.111
,
A:T.182
,
A:T.182
ANP.3:
24 residues within 4Å:
Chain B:
E.46
,
N.50
,
A.54
,
K.57
,
D.89
,
G.93
,
M.94
,
N.102
,
L.103
,
R.108
,
S.109
,
G.110
,
S.111
,
G.130
,
Q.131
,
F.132
,
G.133
,
V.134
,
G.135
,
F.136
,
Y.137
,
T.182
,
R.333
Ligands:
CA.4
25
PLIP interactions
:
25 interactions with chain B
Hydrogen bonds:
B:E.46
,
B:N.50
,
B:K.57
,
B:D.89
,
B:S.109
,
B:S.109
,
B:G.110
,
B:S.111
,
B:S.111
,
B:Q.131
,
B:F.132
,
B:G.133
,
B:V.134
,
B:G.135
,
B:F.136
,
B:T.182
,
B:R.333
,
B:R.333
Water bridges:
B:N.50
,
B:D.53
,
B:D.53
,
B:A.54
,
B:D.89
,
B:G.93
,
B:S.111
2 x
CA
:
CALCIUM ION
(Non-covalent)
CA.2:
6 residues within 4Å:
Chain A:
N.102
,
T.105
,
R.108
,
G.133
,
Y.137
Ligands:
ANP.1
4
PLIP interactions
:
4 interactions with chain A
Metal complexes:
A:N.102
,
A:T.105
,
A:R.108
,
A:G.133
CA.4:
6 residues within 4Å:
Chain B:
N.102
,
T.105
,
R.108
,
G.133
,
Y.137
Ligands:
ANP.3
5
PLIP interactions
:
5 interactions with chain B
Metal complexes:
B:N.102
,
B:T.105
,
B:R.108
,
B:G.133
,
B:Y.137
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Elnatan, D. et al., Calcium binding to a remote site can replace magnesium as cofactor for mitochondrial Hsp90 (TRAP1) ATPase activity. J.Biol.Chem. (2018)
Release Date
2018-04-25
Peptides
TNF receptor-associated protein 1:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
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Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
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Size
Charged
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Cysteine
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Background
3D Viewer
NGL
PV
2D
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PNG
TNF receptor-associated protein 1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
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