SMTL ID : 6d1t.1

Complex of MBD1-MBD and methylated DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

12 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 6 residues within 4Å: Chain A: D.34, Y.36, R.46 Chain B: C.6 Chain C: C.6 Ligands: UNX.10 No protein-ligand interaction detected (PLIP) UNX.2: 3 residues within 4Å: Chain A: T.35, R.46 Ligands: UNX.10 No protein-ligand interaction detected (PLIP) UNX.3: 3 residues within 4Å: Chain A: V.22, R.24, D.34 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: T.52, G.56, C.59 No protein-ligand interaction detected (PLIP) UNX.5: 4 residues within 4Å: Chain A: R.44, I.45, R.46, E.50 No protein-ligand interaction detected (PLIP) UNX.6: 5 residues within 4Å: Chain B: G.7, T.8, T.9 Chain C: G.7 Ligands: UNX.9 No protein-ligand interaction detected (PLIP) UNX.7: 4 residues within 4Å: Chain A: R.32 Chain B: T.8, T.9 Chain C: C.3 No protein-ligand interaction detected (PLIP) UNX.8: 1 residues within 4Å: Chain B: G.10 No protein-ligand interaction detected (PLIP) UNX.9: 5 residues within 4Å: Chain C: A.5, C.6, G.7 Ligands: UNX.6, UNX.12 No protein-ligand interaction detected (PLIP) UNX.10: 4 residues within 4Å: Chain A: D.34 Chain C: C.6 Ligands: UNX.1, UNX.2 No protein-ligand interaction detected (PLIP) UNX.11: 5 residues within 4Å: Chain A: R.46, S.47 Chain C: A.4, A.5, C.6 No protein-ligand interaction detected (PLIP) UNX.12: 3 residues within 4Å: Chain C: A.5, C.6 Ligands: UNX.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, K. et al., Complex of MBD1-MBD and methylated DNA. to be published

Release Date

2018-05-09

Peptides

Methyl-CpG-binding domain protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methyl-CpG-binding domain protein 1