SMTL ID : 6d1w.1

human PKD2 F604P mutant

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.276, K.290, E.291, Y.293 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.276, A:E.291 NAG.2: 1 residues within 4Å: Chain A: N.310 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.310 NAG.3: 3 residues within 4Å: Chain A: D.321, L.322, N.323 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.321, A:N.323 NAG.4: 4 residues within 4Å: Chain B: N.276, K.290, E.291, Y.293 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.276, B:E.291 NAG.5: 1 residues within 4Å: Chain B: N.310 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:N.310 NAG.6: 3 residues within 4Å: Chain B: D.321, L.322, N.323 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.321, B:N.323 NAG.7: 4 residues within 4Å: Chain C: N.276, K.290, E.291, Y.293 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.276, C:E.291 NAG.8: 1 residues within 4Å: Chain C: N.310 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:N.310 NAG.9: 3 residues within 4Å: Chain C: D.321, L.322, N.323 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.321, C:N.323 NAG.10: 4 residues within 4Å: Chain D: N.276, K.290, E.291, Y.293 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.276, D:E.291 NAG.11: 1 residues within 4Å: Chain D: N.310 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:N.310 NAG.12: 3 residues within 4Å: Chain D: D.321, L.322, N.323 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.321, D:N.323

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zheng, W. et al., Hydrophobic pore gates regulate ion permeation in polycystic kidney disease 2 and 2L1 channels. Nat Commun (2018)

Release Date

2018-06-27

Peptides

Polycystin-2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Polycystin-2