SMTL ID : 6d1x.1

N-Domain Of Grp94, with the Charged Domain, In Complex With the Novel Ligand N-Propyl Carboxyamido Adenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x PA7: N-PROPYL CARBOXYAMIDO ADENOSINE(Non-covalent)

PA7.1: 16 residues within 4Å: Chain A: M.21, N.43, A.44, A.47, D.85, V.88, G.89, M.90, N.98, L.99, T.107, G.132, V.133, F.135, Y.136, T.181 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.133, A:Y.136 Hydrogen bonds: A:N.43, A:D.85, A:N.98, A:N.98, A:T.181 Water bridges: A:N.43, A:A.44, A:D.85, A:G.87, A:G.89

3 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 5 residues within 4Å: Chain A: T.148, R.173, T.176, T.184 Ligands: PG4.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.173, A:R.173 Water bridges: A:T.184 PG4.3: 4 residues within 4Å: Chain A: K.73, H.82, W.218 Ligands: PG4.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.73 PG4.4: 1 residues within 4Å: Chain A: K.23 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.19, A:K.23 Water bridges: A:N.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huck, J.D. et al., NECA derivatives exploit the paralog-specific properties of the site 3 side pocket of Grp94, the endoplasmic reticulum Hsp90. J.Biol.Chem. (2019)

Release Date

2018-05-02

Peptides

Endoplasmin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endoplasmin

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