SMTL ID : 6d2s.1

Mycobacterium tuberculosis transcriptional regulator

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: D.9, D.13 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.9, A:D.9, A:D.13, A:D.13 CA.2: 3 residues within 4Å: Chain A: A.248, D.250, L.252 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:A.248, A:L.252, H2O.1, H2O.2, H2O.2

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: Q.86, V.161, G.162, T.165, G.253 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: R.67, I.124, N.128 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 1 residues within 4Å: Chain A: D.20 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.20 Water bridges: A:D.20 NA.6: 2 residues within 4Å: Chain A: N.15, S.199 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.15 Water bridges: A:N.15

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 8 residues within 4Å: Chain A: G.37, G.38, L.39, D.40, P.84, G.85, F.159, G.160 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.37, A:G.38, A:L.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tang, S. et al., Structural and functional insight into the Mycobacterium tuberculosis protein PrpR reveals a novel type of transcription factor. Nucleic Acids Res. (2019)

Release Date

2019-04-17

Peptides

HTH-type transcriptional regulator PrpR: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HTH-type transcriptional regulator PrpR