SMTL ID : 6d33.2 (2 other biounits)

Crystal structure of BH1352 2-deoxyribose-5-phosphate from Bacillus halodurans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 5 residues within 4Å: Chain A: G.150, A.151, D.152, N.180, L.181 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.150, A:D.152, A:N.180 TRS.3: 6 residues within 4Å: Chain B: V.147, G.150, A.151, D.152, N.180, L.181 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.147, B:D.152, B:N.180 Water bridges: B:D.152

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: Q.113, E.120, K.148 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.148 GOL.4: 6 residues within 4Å: Chain B: Q.113, E.120, K.148, A.149, G.150 Ligands: GOL.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.120, B:E.120 Water bridges: B:V.147 GOL.5: 3 residues within 4Å: Chain B: V.147, K.148 Ligands: GOL.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.148, B:K.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, T. et al., Rational engineering of 2-deoxyribose-5-phosphate aldolases for the biosynthesis of (R)-1,3-butanediol. J.Biol.Chem. (2020)

Release Date

2019-10-16

Peptides

Deoxyribose-phosphate aldolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Deoxyribose-phosphate aldolase

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