SMTL ID : 6d3e.1

PPARg LBD in Complex with SR1988

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

homo-dimer

Ligands

1 x FT7: 1-[(2,4-difluorophenyl)methyl]-2,3-dimethyl-N-[(1R)-1-phenylpropyl]-1H-indole-5-carboxamide(Non-covalent)

FT7.1: 19 residues within 4Å: Chain A: F.86, G.88, C.89, Q.90, R.92, S.93, H.127, I.130, Y.131, L.134, L.137, L.144, I.145, M.168, H.253, L.257, L.269, L.273, Y.277 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.86, A:Q.90, A:R.92, A:I.130, A:I.130, A:L.137, A:I.145, A:I.145, A:L.257, A:L.269, A:L.273, A:Y.277 Hydrogen bonds: A:S.93, A:S.93, A:Y.131 pi-Cation interactions: A:H.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frkic, R.L. et al., Structural and Dynamic Elucidation of a Non-acid PPARgammaPartial Agonist: SR1988. Nucl Receptor Res (2018)

Release Date

2019-02-27

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma